Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,928,345 |
T→G |
15.7% |
F277V (TTC→GTC) |
prpE → |
propionate‑‑CoA ligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,928,345 | 0 | T | G | 15.7%
| 280.8
/ 14.3
| 165 | F277V (TTC→GTC) | prpE | propionate‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base T (64/71); new base G (28/2); total (92/73) |
| Fisher's exact test for biased strand distribution p-value = 1.35e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 172 total aligned reads displayed.
TCCAACGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATTGTC > NZ_CP022686/3928207‑3928482
|
tCCAACGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTACAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGtt < 8:377436/140‑1 (MQ=255)
ccAACGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCTGGCGGCGTGtta > 3:726888/1‑139 (MQ=255)
ctcctGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCtt < 1:750756/140‑1 (MQ=255)
gCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGat < 4:526736/140‑1 (MQ=255)
gCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGat < 8:22858/140‑1 (MQ=255)
ctctACACATCCAGCACGACCGGCAAACCTAAAGGTGTTCAGCGTGAAGTCGGCGGATATGCGGTGGCGCTGGCGACATCGATGGACACCATTTTTTGCGGCAAAGCGGGCGGGGTGTTGGTTTGTGCTTCGGAGATctg > 8:147192/1‑138 (MQ=255)
tctACACCTCCGGCACGACTGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCTTCGGATCTCggg > 5:17458/1‑139 (MQ=255)
ctACACCTCCGGCACGACCGGCAAACCTAAAGGTTTGCAGCGTGAGGTCGGCGGATATGCGGTGGCGCTGGCGACCTGGATGGACTCCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCt < 7:245754/140‑1 (MQ=255)
ctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGGGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCt < 8:493705/140‑1 (MQ=255)
caacaaCTCCGTCACGACCGGCAAACGTAAAGGTGTTCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCTGCGTGTTCTTTTGTGCTTCGGATATCGGCt < 6:691513/138‑1 (MQ=255)
cTCCGGCACGACCGGCAAACCTATAGGTGTGCTTCGGGATGTCGGCGGATATGTGGTGGCGCGGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggtgg < 2:210106/140‑1 (MQ=255)
cTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAATGCGGGCGGCGTGTTCTTTTGTTGTTCGGATATCGGCTGggtgg > 1:500543/1‑140 (MQ=255)
cTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGGTGTTTTGTGCTTCGGATATCGGCGGggtgg > 3:437804/1‑140 (MQ=255)
cTCCGGCACGACCGGCAAACCTAAAGGGGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggtgg < 6:218717/140‑1 (MQ=255)
ccGGCACGACCGGCAAACCTAACTGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGAGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTa < 7:884636/140‑1 (MQ=255)
ccGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCGTTTTTGGTGGGGTTATCGGCGGggtgggt > 5:196734/1‑138 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGCCACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGGTTCGGCGATCGGCAgggggggtg > 8:832926/1‑137 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGCCACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTTCTGAGGATTTCGGAGGGGTGGGAg > 6:847270/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCATAGCGGGCGGCGTGTTCTTTTGTGGTGCGGATATCGGCGGGGTGGTAg > 8:187179/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCTGGCGGCGTGGTGTTTTGTGCTTCGGATATCGGCGGGGTGGTAg > 6:532688/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTTTGCTTCGGATTTCGGGTGGGTGGTAg > 6:493106/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggtgggtg > 2:181916/1‑137 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTGTGCTTAGGATATCGGCGGGGTGGTAg > 3:690352/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTTGGATATCGGCTGgggggttg > 1:375825/1‑138 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGGTCTTTTGTGCTTCGGATATGGGGTGGGGGGTAg > 6:443382/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGGGGCGCTGGCGACCTCGATGGACACAATTTTTGGCGGCAAAGCGGGAGGCGTGGTGGTTTGTGCATGGGATTTATGCGGGGGGGTAg > 7:40546/1‑140 (MQ=255)
gctcGACCGGCAGACCTCAAGGTGTGCAGCGTGATGTCGGCGTATATGCGGTGGCGCTGGCGAGCTCGATGGACACCTTTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 3:79146/137‑1 (MQ=255)
gCACGTCCGGCTAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACTCCTTTTTTTGCGTCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 5:505819/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 2:672310/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 2:393740/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 1:72486/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 4:476953/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 4:103360/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 1:327691/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGGGATGTCGGCGGATATGCGGGGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 1:257037/140‑1 (MQ=255)
aagtccGGCAAACCTAATGGTTTGCAGCTTGATGTCGGCGTATATTCGGTGGCGCTGGCGACCTCGATTGACACCATTTTTGGCGGCAATGCGGGCGGGGTGTTCTTTTGTGCTTCTGTTATCGGCTGGGTGGTAGGGCa < 4:542968/136‑1 (MQ=255)
aCGTCCGGCAAACCTAAAGGTGTGCATCGTGATTTCGGCGGTTATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGTATATCGGCTGGGTGGTATGGCa < 4:547270/140‑1 (MQ=255)
aCGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa < 1:652878/140‑1 (MQ=255)
aCGACCGGCAAACCTAAAGGTGAGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa < 6:466767/140‑1 (MQ=255)
cGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCAt < 5:294597/140‑1 (MQ=255)
cccGGCAAACCTAAAGTTGTGCAGCGTGATGAAGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCAATTATGGCGGAAAAGCGGGCGGCGTGTTGTTTTGTGGTTAAGATTTATGGTGGGTGGTAGGGCAtta > 1:892483/2‑139 (MQ=255)
aCCGGCAAACCTAAATGTGTGCAGAGTTATTTAGGCGGATATGCGGTGGCGCTGGAGAGATAGATGGATACCATTTTTGGCGGGAATGCGGGCGGCGTGTTGTTTTGTGCTTAGGATATAGGCTGGGTTGTAGGGCAttg > 8:262621/1‑139 (MQ=255)
aCCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGGTTTGTGCTTGGGGTATCGGCGGGGGGGTTGGGGAttg > 7:803366/1‑139 (MQ=255)
aCCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGAGGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGTTTTGTGGTTCGGATATCGGCTGTGTGGGTGGGCAttg > 6:565814/1‑139 (MQ=255)
ggCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGta < 4:142981/140‑1 (MQ=255)
ccAAACCTC‑AGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCGGGCGACCTCGATGTACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTTGTAGGGCATTCGtata < 3:549567/139‑1 (MQ=255)
cTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATGGGCTGGGTGGTAGGTCCTTCGTATATCttt > 3:311456/1‑140 (MQ=255)
aaGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCCGATATAGGCTGGGGGGTAGGGCATTCGTATATAGTTTaa > 1:233916/1‑139 (MQ=255)
aGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTAcg < 2:814445/140‑1 (MQ=255)
tgtgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTTTTGTTCGGATATCGGCGGGGTGTTAGGGGATTAGTTTTTAGTTTACgagc > 5:655821/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTTTGGTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATTTCGTTTACGcgccg > 6:354242/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTTTGGTTCGGCTATCGGCTGGGTGGTAGGGCATTAGTTTATCGTTTTCGcgccc > 5:486362/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTTTGCTTCGGATATAGGCTGGGTGGTTGGGCATTCGTATATCGTTTACGcgccc > 2:57846/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGGTTCGGGTATCGGGTGGGTGGGAGGGCATTCGTATATCGGTTTCGcgccg > 7:418823/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccg > 2:784518/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATAGGCTGGGTGGTATGGCATTCGTATATCGTTTACGcgccg > 2:437284/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGAATTAGGGATGGTGGGATGGCATTCGTATATGTTTTACGcgccc > 7:672174/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCGTCGGATATCGGCGGGGTGGTAGGGCCTTCGTATATGGTTTACGcgccc > 6:367373/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGGTCTTGGGATATCGGCTGGGTGGTAGGGAATTCGTATATCGTTTACGcgccg > 5:409177/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCGTTTGTGCGTCGGAGATCGGCTGGGTGGTAGGGCATTCGTATATAGTTTACGcgccg > 4:562963/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccg > 7:616062/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTGTGCTTCGGATATCGGCGGGGGGGTTGGGCATTGGTTTTTAGTTTACGcgccc > 5:102625/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGTTTTGTGCTTCGGATATCGGCTGGGTGGTTGGGCATTCGTATATAGTTTACGcgccg > 2:289513/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGTTTTGTGCTTCGGATATAGGCTGGGTGGTTGGGGATTCGGATATAGTTTAAGcgccg > 4:650380/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTGGGTTATCGGCTGGGTGGTAGGGCATTAGTATATCGTTTTCGcgccg > 3:615220/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTGTTTTGTGGGTCGGATATCGGCTGGGGGGTAGGGCATTGGTTTATCGTTTACGcgccg > 1:37165/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGGTGGTTTGTGGGGGGGTTATCGGGGGGGTGGTTGGGGCTTGGGATTTAGTTTTAGcgccg > 3:486453/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGAGGCGTGTGAGTTTTTGGGTCCGTTATAGGCGGGGGGGTTGGGCATGAGTATATAGTTTAcaacccc > 3:5/1‑134 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTATGGCGGCAAAGCGGGCTGCGTGTTCATTTGTGCTTCGGATAACGGCTGGGTGGTAGGGCATTAGTATAACCTTTACGcgccg > 4:328227/1‑140 (MQ=255)
gCAGCGGGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGAGGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccgc < 6:416864/140‑1 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCgct < 2:203940/140‑1 (MQ=255)
tCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCGGCTGGCgggg > 4:315916/1‑140 (MQ=255)
gcgtcggCTATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGGTCTTTTGGGCCTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCGGCTGGCgggg < 6:289435/136‑1 (MQ=255)
gcggcggATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCgggg < 1:566833/139‑1 (MQ=255)
ggcggATATGCGGTGGCGCTGGCGACCACGATGGACACCATTTTTGTCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATGCGTATATCGTTTACGCGCCGCTGCTGGCGGGGAt < 1:443554/140‑1 (MQ=255)
gcggATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTGTTGTTCGGATATCGGCTGGGTGGGTGGGGGTTGGTTTTTAGTTTAAGCGCCGCTGCTGGGGGGGGTg > 1:386132/1‑140 (MQ=255)
tGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCGTTTGTGCTTCGGATATCGGCGGGGTGGTAGGGCATTCGGATATCGTTTACGCGCCGCTGCGGGCGGGGAGGGCGCCTa > 6:161677/1‑140 (MQ=255)
gTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGGGTGGGATATCGGCGGGGGGGTAGGGGATTCGTTTATAGTTTACGCGCCGCTGCTGGCGGGGGTGGCGACTATCGt > 4:810231/1‑140 (MQ=255)
gTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATAGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATAGt > 6:804921/1‑140 (MQ=255)
ggCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGTTTTGTGCTTCGGTTTTCGGCTGGGTGGTTGGGGATTGGTATATCGTTTACGCGCCGCTGCTGGCGGGGGTGGCGACTATCGttt > 7:646059/1‑140 (MQ=255)
gcgcTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCTTCGGCTATCGGCTGGGTGGTTGGGCAATAGTATTTCGTTTACGCGCCGCTGCTGGCGGGGATGGCGGCGATCGtttt > 3:317785/1‑139 (MQ=255)
gcgcTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGGTTCGGATATCGGCGGGGTGGTAGGGCATTCGTTTATCGTTTACGCGCCGCTGCTGGCGGGGATTGCGACTATCGTTTa > 8:772099/1‑140 (MQ=255)
gcgcTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGTTTTGTGCGTCGGATATCGGCTGGGTGGTAGGGCAGTAGTATATCGTTTACGCGCCGCGGCTGGGGGGGATGGCGCCGATCGtttt > 2:655441/1‑139 (MQ=255)
cTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCGTCGGATATAGGCTGGGTGGTAGGGCATTAGTATATAGTTTACGCCCCGCTGCTGGCGGGGATGGCGACTATAGTTTACGa > 3:609973/1‑140 (MQ=255)
ccTCGATGGACACCATTTTTTGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGTTATCGGCTGGGTGTTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGTGGATGGCGACTATCGTTTACGAAGGATTg < 7:799163/140‑1 (MQ=255)
ccTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTTTATCGTTTACGCGCCGCTGCTGGTGGGGATGGCGACTATCGTTTACGAAGGAttt > 4:904221/1‑139 (MQ=255)
gATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGa < 3:593862/140‑1 (MQ=255)
gATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACGATCGTTTAAGAAGGATTGCCgc > 7:394920/1‑139 (MQ=255)
gATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTGCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGa < 4:580954/140‑1 (MQ=255)
aTGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGGAGGGCATTAGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGAc < 3:888890/140‑1 (MQ=255)
gACACCATTTTTGGCGGAAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGATTACGCGCCGCTGCTGGCGGTGATGGCGACTATCGTTTACGAAGGATTGCCGACCTg < 7:870318/140‑1 (MQ=255)
acacCATTTTTGGCGGCTAAGCGGGCGGCGTGTTATTTTGTGCTTCGGATATCTGCTGGGTGGTAGGGAATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGTCTACTATCGTTTACGAAGGATTGCCGACCTgg < 3:228265/140‑1 (MQ=255)
acacCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTgg < 5:574910/140‑1 (MQ=255)
ccccATTTTTGGCGGCAAAGCGGGCGGCGTGTTCGTTTGTGCTTCGGTTATCGGCGGGGTGGTAGGGCATTCGGATTTAGTTTACGCGCCGCGGCTGGCGGGGGTGGCGCCTTTCGTTTACGATGGATTGCCGACCTggg > 6:674534/3‑139 (MQ=255)
acCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTAGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGcc > 5:771246/1‑140 (MQ=255)
tGGCGGCAAAGCGGGCGGCGGGTTCTTTTGTGCTGCGGATATCGGCGGGGTGGTAGGGCATTCGTATATCGGTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTgcg < 5:803127/140‑1 (MQ=255)
ggcAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATAGGGTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCGGCTGGCGGGGGTGGCGTCAATCGGTTTAGAAGGATTGCCGACCGGGCCGGACTgcggcgg > 3:71397/1‑139 (MQ=255)
gcAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCgtg < 3:964421/140‑1 (MQ=255)
gggtTCTTTTGTGCTTCTGATATCGGCTGTGTGGTTGTTCATTCGTATATCGTTTACGCGCAGCTGCTGGCGGGGATGGCGACTATAGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATTGt < 6:215042/138‑1 (MQ=255)
tgtTCTTTTTTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGGCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATTTTc > 8:464544/1‑140 (MQ=255)
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TCCAACGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATTGTC > NZ_CP022686/3928207‑3928482
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
