Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,928,345 |
T→G |
11.5% |
F277V (TTC→GTC) |
prpE → |
propionate‑‑CoA ligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,928,345 | 0 | T | G | 11.5%
| 357.6
/ 9.9
| 198 | F277V (TTC→GTC) | prpE | propionate‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base T (79/90); new base G (26/2); total (106/92) |
| Fisher's exact test for biased strand distribution p-value = 2.32e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 199 total aligned reads displayed.
CGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATTGTCG > NZ_CP022686/3928212‑3928483
|
cGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTcgt > 5:787861/1‑136 (MQ=255)
cGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCtttt < 1:396581/140‑1 (MQ=255)
cGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCtttt < 7:215550/140‑1 (MQ=255)
ctcctGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCtt < 7:955261/140‑1 (MQ=255)
tctcTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGatatgg > 3:822137/1‑138 (MQ=255)
tctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGCCCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCGTTTGTGCTTCGGATAACggg > 1:871324/1‑139 (MQ=255)
tctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGCCACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCGTCGGATTTCGGc > 1:222269/1‑140 (MQ=255)
ctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCt < 2:845998/140‑1 (MQ=255)
ctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCt < 1:41104/140‑1 (MQ=255)
ctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTATGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCt < 7:475280/140‑1 (MQ=255)
tACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTg > 2:656341/1‑140 (MQ=255)
tACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTCTGCGTCGGATAGAGGCTg > 8:1068703/1‑140 (MQ=255)
tACACCTCCGGCACGACCGGCAAACCGAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACCCCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTTCTTAGGATATAGGcgg > 8:127313/1‑138 (MQ=255)
acCTCCGGCTCGACCGGCAAACCT‑AAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGCCATCGATGGACGCCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCTGATATCGGCTGggtg > 8:687002/1‑140 (MQ=255)
cTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCTTAGGATATAGGCTGggtgg > 7:388073/1‑140 (MQ=255)
cTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggtgg < 8:973412/140‑1 (MQ=255)
ccGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGGGCTTCGGATATCGGCTGGGTGGTa > 4:723060/1‑140 (MQ=255)
cGGCACGACCGGCACACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 4:1014839/140‑1 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGCCCTCGATGGCCACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGGGCGTCGGATATCGGCTGGGGGGTAg > 8:732161/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg > 2:246596/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTGATTTTTGGTTAGGATTTCGGCTGGGTTGTAg > 1:569580/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg > 2:402875/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGAAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGCCCTCGATGGACACAATTTTTGGCGGCAACGCGGGCGGCGTGTTCTTTTGAGCTGAGGCTATCGGCGGGGGGGGAg > 7:1068690/1‑140 (MQ=255)
gctcGACCGGCAAACCTAAAGGTTTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGTCGACCTCTATGGACACCATTTTTGGCGGCTAAGCGGGCGGCGTGTTCATTTGTGCTTCGGATATCGGCTTGGTGGTAggg < 7:324075/137‑1 (MQ=255)
gaaCGTCCGGCTAACGTAAAGTTTTCCAGCGTGATGTCGGCGGATATGCGGTCGCGCTGGCGACCGAGATGTACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 6:502172/136‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGTCCACCAGTTTTGGCGGCAAAGAGGGCGGCGTGGTGGTTTGTGGAGCGGAAAAATGCTGGGTGGTAggg > 2:153284/1‑140 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGTACACCATTTTTGGCGGCAAAGCGGGCGGCGGGGTGTTTTGTGGTTGGGATTTCGGGTGGGTGGGAg > 5:1038562/1‑138 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGGTTCGGATATCGGCGGGGTGGGAg > 5:952982/1‑138 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGTCTGGGTGGTAg < 6:946247/138‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 2:989080/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 1:628196/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 8:811866/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 4:934053/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 2:340675/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 8:226465/140‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCGCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 6:770100/138‑1 (MQ=255)
gCACGACCGGCAAACCAAAAGCTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTAGATGGACACCATTTTTGGAGGCAAAGCGGGCGGCGTGGTATTTTGTGGTTAGGATAGAGGgtgggtgggtt > 5:164821/1‑135 (MQ=255)
ccACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGGGGCGCGGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 3:146808/139‑1 (MQ=255)
aCGACCGGCAACCCTAAAGGGGTGCAGCGTGATGGCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGGGGTAGGGCa < 1:25155/140‑1 (MQ=255)
aCGACCGGCAAACCTAACGGTGTGCAGCGTGATGTCGGCGGATTTGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa < 8:285656/140‑1 (MQ=255)
aCGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGTTGGCGCTGGCGACCGCGATGGACACCAGTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTGTGCTTCGGATATAGGCGGGGTGGTAggg > 6:724688/1‑138 (MQ=255)
aCGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGTGACCTCGATGGCCACCATTTTTGGCGGCCAAGCGGGCGGCGGGTTGGTTTGTGCGTGGGATTTCGGCTGggtggtgtgg > 5:667854/1‑134 (MQ=255)
aCGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa < 3:719101/140‑1 (MQ=255)
aCGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGGAggg > 5:113488/1‑138 (MQ=255)
aCCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCtttt > 2:451627/1‑106 (MQ=255)
aaGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTAc > 4:1041489/1‑140 (MQ=255)
aGGTGTGCAGCGTGAGGACGGCGGATATGCGGGGGCGCTGGCGACCGCGTTGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCGGGGTGGTAGGGCATTCGTATATCGTTTAcg < 4:109775/140‑1 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCTAAGCGGGCGGCGTGTTCTTTTGTGGTTGGGATATAGGCTGGGTGGGTTGGGATTCGTATATAGTTTAAGccccg > 1:470045/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGGTTCTGATTTCGGCTGGGTGGTAGGGCATTCGTATATCGTTTAAGcgccg > 8:861340/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGGGTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccc > 7:732444/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa > 2:1016036/1‑118 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa < 1:1016036/118‑1 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccg > 4:835612/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGAATTCGTATATCGTTTACGcgccg > 8:359628/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTAGGAAATCGGCTGGGTGGTAGGGAATTGGTATATCTTTTACGcgccg > 4:609731/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCGTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccc > 8:48059/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTGTGATTAGGATATAGGCGGGGTGGTTGGGCATTCCTATATCGTTTACGcgccg > 7:528630/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTAGTTTGTGCTTAGGATTTAGTCTGGGGGGGAGGGCCTTAGTATATAGGTTAAGcgccc > 1:294110/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTAAGcgccc > 4:813170/1‑139 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTGTTTTTTGCTTGGGGTATAGGGGGGGGGGGTTGGGATTGGGTTATAGTTTAAGcgccc > 1:137191/1‑139 (MQ=255)
ggCAGCGTGATGGCGGCGGATATGCGGTGGCGCTGACGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTGCTTTTGGGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACgcgc < 5:309508/137‑1 (MQ=255)
gCAGCGTGATGTCGGCGGATATGCGGTGGAGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCTTGTTGATTTGTGCATCGGATATCGGCAGGGGGGTAGGGCCATCGTATATCGTTTACGcgccgc > 1:1153498/1‑140 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACCCCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTCTGCTTCGGAAATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccg > 6:97726/1‑138 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTTTGGGTGGGATATCGGCTGGGTGGTAGGGGATTCGGATATCGTTTTCGccccc > 5:105932/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTATGGCATTCGTATATCGATTACGcgccg > 6:618349/1‑138 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATAGGCTGGGTGGGAGGGCATTCGTTTATCGTTTTCGcgccg > 6:634052/1‑138 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTAGGATAAAGGCTGGGTGGTAGGGCATTCGTATATAGTTTACCcgccc > 5:635457/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATATTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGGTTCCGAAATCGGGTGGGTGGGTGGGCAGTAGTTTATAGTTTACGcgccc > 5:565176/1‑137 (MQ=255)
tGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTTTGGGTAGGTTATAGGGTGGGTGGTTTGGGCTTGGTATTTAGTTTACGCCCCCCTGCTgg > 7:143747/1‑140 (MQ=255)
tGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGGATTAGTATATCGTTTACGCGCCGCTGCTgg > 1:208101/1‑140 (MQ=255)
tGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCGGGGGGGTAGGGCTTTCGTATATAGTTTACGCGCCGCTGATgg > 3:431677/1‑140 (MQ=255)
tGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGATTCGGATATCGGCTGGTTGGTAGGGCATTAGTATATAGTTTACGCGCCGCTGCTgg > 4:306467/1‑140 (MQ=255)
tGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTCTTTTGTGGTTCGGATATCGGCGGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTgg > 4:422001/1‑140 (MQ=255)
aTGTCGGCGGATATGCGGTGGCGCTGGCGCCCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGGTGTTTGGTGCGTCTGATATAGGCTGGGTGGTAGGGCAGTCGGAGTACGGTTACTCGCCGCTGCAgg > 6:437166/1‑138 (MQ=255)
tCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCgg < 6:412304/138‑1 (MQ=255)
gcggATATGCGGTGGCGCTGGCGACCTCGATGGACCCCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCGTTTGGGGTTCGGGTATCGGCTGGGTGGTTGGGGATTCGGATTGAGTTTACGCGCCGCGGCTGGCGGGGCTg > 2:682499/1‑140 (MQ=255)
ggATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATCGGCTGGGTGGTTGGGCATTCGTATATCGTTTAAGCGCCGCGGCTGGCGGGGATg > 5:841437/1‑138 (MQ=255)
atatGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCGGGGTGGTAGGGCATTCGTATTTCGTTTACGCGCCGCAGCTGGCGGGGAAGGCGa > 4:220381/1‑140 (MQ=255)
atatGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGCGTGGGTGGGAGGGGCATCGGATATAGTTATCGCGCCGCTGCGGGCGGGGATGGCgg > 3:120668/1‑139 (MQ=255)
atGCGGGGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGa < 6:553367/138‑1 (MQ=255)
tGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTa < 2:741974/140‑1 (MQ=255)
tGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTa < 4:52570/140‑1 (MQ=255)
tGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTGCTTGTGTGGGTAGGTGATAGGGTGGGTGGTAGGGGCTTCGGTTATAGGTTACGCGCCGCGGGTGGCGGGGCTggggcc > 6:1084522/1‑134 (MQ=255)
gTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGGTTTGTGGTTCGGGTTTAGGGGGGGTGGGAGGGCATTGGTATATAGTTTTCGCGCCGCTGCTGGGGGGGCTGGGGCCTAtgct > 1:837913/1‑137 (MQ=255)
gcgcTGGCGACCTCGATGGCCACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTCGTTTGTGGTTAGGATATAGGCTGGGTGGTTGGGCATTAGTTTTTAGTTTACGCGCCCCCGCGGGCGGGGTAGGCGACTATCGtttt > 3:533300/1‑139 (MQ=255)
ggCGCCCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTGCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGCTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAg < 8:41227/140‑1 (MQ=255)
ggCGACGTCGATGGACACCATTTTTGGCGGCACAGCGGGCGGCGTGTTCTTTTGTGCTGCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAg < 7:953057/140‑1 (MQ=255)
ggCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAg < 8:914071/140‑1 (MQ=255)
ggCGACCGCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTGCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAg < 7:654947/140‑1 (MQ=255)
ccTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTg < 2:25854/140‑1 (MQ=255)
cTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATCGGCTGGGTGGGAGGGCATTCGTATATAGTTTAAGCGCCGCTGCTGGCGGGGATGGCGACGATAGGTTACGCACGAtttc > 7:1024988/1‑138 (MQ=255)
ttgACACCTTTATTGGCGGAAAAGCTGGCGGCGTGTTCTTTTGTGCTTCGGAAATCGGCTGGTGGTTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGTATGGCGACTATCGTTTACGAAGGATTGCCGAcc < 3:574741/138‑1 (MQ=255)
ccacCATTTTTGGCGGCAAAGCGGGCGGCGTGTGCTTTTGTGCTTCGGATATCGGCTGGGGGGTAGTGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTgg < 4:360709/139‑1 (MQ=255)
acacCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCATCGGATATCGGCTGGGTAGTAGGGCATTCGTATATCGTATACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTgg < 1:148098/140‑1 (MQ=255)
acacCATTTTTGGCGGCAAAGCGGGCGGCGGGTTCTTTTGTGCTTCGGATCTCGGCTGGGTGGTAGGTCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTgg < 8:53577/140‑1 (MQ=255)
acCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATGGGCGGGGTGGGTGGGCATTAGTATATAGTTTACGCGCCGCGGCTGGCGGGGATGGCGCCTATCGTTTACGAAGGATTTCCGACCAgggc > 1:1145644/1‑138 (MQ=255)
cATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCgg < 1:890120/140‑1 (MQ=255)
aTTTTTGGCTGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGa < 7:24158/140‑1 (MQ=255)
tGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGGGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTgcg < 3:657407/140‑1 (MQ=255)
gcAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTgcggcg < 6:239503/138‑1 (MQ=255)
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CGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATTGTCG > NZ_CP022686/3928212‑3928483
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
