Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,056,951 |
C→A |
17.5% |
H134N (CAC→AAC) |
adk → |
adenylate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,056,951 | 0 | C | A | 17.5%
| 182.2
/ 4.1
| 131 | H134N (CAC→AAC) | adk | adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base C (34/64); new base A (25/4); total (63/68) |
| Fisher's exact test for biased strand distribution p-value = 1.08e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 134 total aligned reads displayed.
GCGTACCATTCCGCAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATC > NZ_CP022686/4056812‑4057088
|
gcgTACCATTCCGCAGGCAGACTCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATc < 8:574941/140‑1 (MQ=255)
gcgTACCATTCCGCAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATc < 3:321023/140‑1 (MQ=255)
gcgTACCATTCCGCAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATc < 2:553977/140‑1 (MQ=255)
ccATTCCGCAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACg < 5:186127/138‑1 (MQ=255)
ttCCGCAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTaaa > 7:766413/1‑140 (MQ=255)
ttCCGCAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTaaa > 4:927008/1‑140 (MQ=255)
ttCCGCAGGCAGACGAGATGAAAGAATCTGGCATAAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGCACGTATCTTAGGACTCCGCGTTCACGCGCCGTCTTGTGGTGTTTAATAAGTTaaa > 2:462310/1‑140 (MQ=255)
caggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTATGCCGCCGCGTTCACGCGCCGTCTGGGCTTGTGTATACAGTTAAATTc > 6:415744/1‑138 (MQ=255)
aggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAAt < 2:795098/140‑1 (MQ=255)
ggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGCCCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATGACGGTAAATTCaa > 6:495691/1‑138 (MQ=255)
ggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGttaaattaaa > 5:164755/1‑138 (MQ=255)
gcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATcc > 4:754084/1‑140 (MQ=255)
gcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACCTTAAATACAAtac > 3:875348/1‑138 (MQ=255)
agACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATAGTAGGCCGCCGAGTTCGCGACCCGTCTGGTCGTGTTTATCACGTtaaattaaataa > 6:109499/1‑136 (MQ=255)
cgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGGTTATCGCGTTTAATTAAATCCGCCGa > 6:6706/1‑138 (MQ=255)
cgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTAAATTGAATgcgccgc > 6:420078/1‑137 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTa < 3:241620/140‑1 (MQ=255)
gtaagaagCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTAGCGTAGGCCGCCGCGTTCACGCGCCGTCTGGGCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAg < 3:139424/138‑1 (MQ=255)
gAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGt < 6:792834/138‑1 (MQ=255)
aaaGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGCAACTa > 6:236541/1‑138 (MQ=255)
aagCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAAACTTAAATTCAATACGCCGAAATTAGAAGGc > 7:304572/1‑140 (MQ=255)
gCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATGACGGTAAATTAAATACGCCGCAAGTATAAGGCaa > 1:218877/1‑140 (MQ=255)
gCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATACCGTTTAATTAAATACCCCCAAATTAGAAGGCaa > 8:197068/1‑140 (MQ=255)
ggggCATCAATGTTTATTACGTTCTGGAATTCTACGTACCGGACGAACTGATTTTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCTAAAGTAGAAGGCaaa < 4:70873/139‑1 (MQ=255)
gCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAgac < 2:317831/140‑1 (MQ=255)
ttttaTTACGTTCTGGAATTCGACGTCCCGGACTAACTGATTGTTGACCGTAGCGTCGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGtt < 5:731366/134‑1 (MQ=255)
gTTTATTACGTTCTGGAATGCGCCGTCCGGGAGGATATTATTGTTGACCGTACCGTCGGCCGCCGCGTTCACGGGCCGTCGGGTCGGGTTTATCACGTTAAATTCAATCCGCCGAAAGTCGACGGCAAAGACGACGTTAc < 2:343872/140‑1 (MQ=255)
gTTGATTACGTTCTGTAATTCGACGTACCGGACGAACTTATTGTTGACCGAATCGTAGGCCGCCGCGTTCACGCGCGGGCTGGTCGTGTTTATCACGTTAAATTCAATCCCCCTAACGTATAAGGCAAAGACGACGtt < 5:141822/138‑1 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTCAATCCGCCGAAAGTAGAAGGCAAATACGACGTTACCGGt > 8:92164/1‑140 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACCGTAAAAAAAATCCGCCCAAATTAGAAGGCAAAGACGACGGTAACGGt > 1:513720/1‑140 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACGTTAAATTAAATCAGCCGAAAGTAGAAAGCAAAGACTCCCTTACCggg > 7:767587/1‑139 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAACGTTAAATTAAATACGCCGAAAGTAGAAGGCAAAGACGACGTTACCggg > 1:640909/1‑139 (MQ=255)
ttACGTTCTGTAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTg < 7:511774/140‑1 (MQ=255)
tACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAAAGTTAAATTCAATCCGCCGAAATGAGAAGGCCAAGACGACGTTAcccgggg > 7:504044/1‑135 (MQ=255)
ggtCTGGAATTCTACGTACCGGACGAACTGATTGTTGACAGTATCGTAGGCCGCCGCGTTCACGCGCCGTATGGTCGTGTTTATCACGATAAATTCAATACGCCGAAAGTATAATGCAAAGACCACGTTAACGGTtaagc > 8:591062/3‑139 (MQ=255)
gTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATCACGTTTAATTAAATCCGCCGAAATTAGAAGGCAAAGACGCCGTTACCGGTgaaga > 8:445955/1‑140 (MQ=255)
ttCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGGTATAACGTTAAATTCAAACCGCCGAAAGTATAAGGCCAAGCCGAACTTACCCGTgaagaa > 3:212317/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTCAATCCGCCGAAAGTATAAGGCAAAGAACACGTTACCGGTGAAGAAc > 4:556325/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGGGATTATAACGATAAAATCAAACCGCCGCAAGTAAAACGCAAAGACGCCGTGACCCGTgatgc > 5:862113/1‑135 (MQ=255)
cTGGAATTCGACGTACCGGACTAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTgaagaa < 6:645998/138‑1 (MQ=255)
gAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCTAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGAc < 1:253037/140‑1 (MQ=255)
gAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGAc < 2:79466/140‑1 (MQ=255)
gAATGCGACGTACCGGCCGAACTGATTGTTGACCGTATCGTCGGCCGCCGCGTTCACGCGTCGTCTGGGCGGGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGAc < 8:737717/140‑1 (MQ=255)
aaTTCGACGTCCCGGACGAACTGTTTGTTCACCGTATCGTAGGCCGCCGCGTTAACGCGCGGGCTGGTCGTTTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACt < 1:143893/140‑1 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACCTTAAATTCAATCCGACCGAAGTAGAAGGCAAACACGACCTTACCCGGGAAAAACTggcaac > 5:607574/1‑133 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTAAATTAAATCCGCCGAAAGTAGAATGCAAAGCCGACGGTACAGGTGAATACCTGAcaaacc > 3:752788/1‑135 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACAGTATCGTAGGCCGCCGCGTTAACGAGCCGTCAGGTCGTGTTTATAACGTTAAAATAAATACCCCGAAAAAATAAAGCAAAGACGACTTTTAAGGTGAAGAACAGACTAccc > 8:270576/1‑140 (MQ=255)
aCGTACAGGACGAACTGATTGTTGACCGTATCGTAGGCCCCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTGAAATTAAAACCGCCGAAAATAGAAGGCAAAGTCCACCATACCGGAGAAGAACAGACTAccc > 5:99578/1‑138 (MQ=255)
tACCGGACTAACTTATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGTTTAAATTCAATCCGCCGAAAGTATAAGCAAATGACGACGTTACCGGTGAAGAACTGACTACCCGTaaa < 1:7356/140‑1 (MQ=255)
aCCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTAAATACGCCGAAAGTAGAATGCAAAGACGCCGTTACCGGTGAAGAACGTACTAccccgtaat > 2:540386/1‑134 (MQ=255)
aCCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACCTTAAATTAAATCCGCCCAAAGTAGAATGCAAAGACGACCTTACCGGGGAAGAACAGACTACCCGTaaaa > 3:39336/1‑139 (MQ=255)
cgggACGAACTGTTTGTTGACCGTTTCGTCGGCCGCCGCGTTCACGCGCCGTGTGGGCGTGTTTTTCAGGTTAAATTCAATCCGCCGAAAGTAGAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 3:537590/138‑1 (MQ=255)
ccGGAGTAACTGAATGTTGACCTAATCGTAGGCCGCCGCGTTCACGCTCCGTCTGGTCTTGTTTATAACGTTAAATTGAATCCGCCGAAAGTTGATTGCAATGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 8:88345/140‑1 (MQ=255)
ccGGACTAATTGATTTTTGACGGTTTCGTTGGCCGCCGCGTTCACGCGCCGTCTGGTCGTTTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGTCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTaaa < 6:734468/138‑1 (MQ=255)
ccGGACGAACTGATTGTTGACCGTATCTTAGGCCGCCGCGTTCACGCGCGGTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 1:905061/140‑1 (MQ=255)
ccGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCTTCGGGTCGTGTTTATCACTTTAAATTCAATCCGCAGAAAGTAGAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTaaa < 5:26810/138‑1 (MQ=255)
ccGCACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATCCCGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 2:819119/140‑1 (MQ=255)
gACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCGCGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGa > 2:815468/1‑140 (MQ=255)
cggAAGTGATTGTTCACGGTAGCGTTGGCCGCCGCGTTCACGCGGCGTCGGGTCGTTTTTATCACGTAAAATTCAATCCGCAGAAATTATTAGGAAATGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:111370/138‑1 (MQ=255)
cctaaCTGATTGTTGACCGTAGCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCCCGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 5:378486/135‑1 (MQ=255)
aCGTACTGATTGTTGACCGTTTCGTAGGCCGCCGCTTTCACGGGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCGAATGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:100837/140‑1 (MQ=255)
aCGAATTGATTGTTGACTGTATGTTCGGCCGCGTCGTTCACGCGCCGTCTGGGCGTTTTTATCACGTTAAATTCATTCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 6:624402/138‑1 (MQ=255)
aCGAACTGATTGTTGACGTTATCGTCGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTTTTTATCACTTTAAATTAAATCCGCCGAAATTAGATGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:556325/140‑1 (MQ=255)
aCGAACTGATTGTTGACGTTATCGTAGGCCGCCGCTTGCACGCGCCGTCTGGTGGTGTTTATCAGGTTAAATTAAATCCGCCGAAAGTATAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 8:304572/140‑1 (MQ=255)
aCGAACTGATTGTTGACCGTATGGTAGGCCGCCGCGTTCACGCGCCGGTGGGTCGTGTTTATCACTTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 2:575375/140‑1 (MQ=255)
aCGAACTGATTGTTGACCGTATCTTAGGCCGCCGCTTGCACGCGCCTTCTGGTGGTGTTTATCACTTTAAATTAAATCCGCCGAAAGTAGAAGTAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 5:236541/138‑1 (MQ=255)
tGATTGTTGACCGTATCGTAGGCCGCCGGGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAATGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGaa < 1:921734/140‑1 (MQ=255)
tGATTGTTGACCGTATCGTAGGCCGCCGCGATCACGCGCCGTCTGGTCGTTTTTATCACGTTAAATACAATCCGCCTAAATTAGAAGCAAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGaa < 4:922712/140‑1 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTAAATACGCCGCAAGTAGAAGGCAAAGACGCCGTTACCGGTGAAGAACTGACTACCCGTAAAGACCATCCGGAAgaga > 1:213397/1‑140 (MQ=255)
ttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTTTCACGTTAAATTCAATCCGCCGAATGTAGAAGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 7:261078/140‑1 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTGAATACCCCCAAACTAGAAGGCAAAGACGCCGGTACCGGTGAATCACTGACTACCCGGAAAGACGATCAGGAAGAGACcgg > 7:166353/1‑139 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGGCGTGGTTATAACGTTAAATTCAATCCGCCGAAAATATTAGGCAAAGACGACGTTTCCGGTGTAGAACTGGCGACCCCTAAAGACGCTAAGGAAGAGAccct > 3:685388/1‑138 (MQ=255)
gTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATACGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGGCAACCCGTAAAGACGATCAGGAAGAGACcgtacct > 4:1039802/1‑138 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGCTCGTGTTTATCACGTTAAAATAAAACAGCCCAAAGAAGAAGGCAAAGACCACGTTAACGCGCAAAAAATGGCTACCCCTAAACACAATCAGGAAGAGACcctgcgt > 2:671686/1‑140 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGACTGGTCCTGTTTTTAAAGTTTAAATAAATCCCCCGAAAGTATAACGCAAAGAAGCCGGTTCCGGTGAAGAACAGACTACCCGTAAAGCCGCTCACGTAGCGTCcgttagg > 7:773909/1‑136 (MQ=255)
tATCGTCGGCCGCCGCGTTCACGCGCGGTGTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCTAAAGTCGAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgtacg < 5:598693/138‑1 (MQ=255)
cggCCGCCGCGTTCACGCGCCGGCTGGGCGTGTTTATCACTTAAAATTCATTCCGCCGAACGTAGAAGGCAAAGCCGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 8:203728/139‑1 (MQ=255)
cgccgcGTTCCCGCGCCGTCTGGTCGTGTTTATCACGTTTAAATCAATCCGCCGGAAGTAGAAGGCAAAGCCGCCGTTTCCGGGGAAGAACTGCCTACCCGGATAGACGATAAGGAAGAGACCGTACGTAAAAGTCTggg > 4:671816/1‑139 (MQ=255)
cgccgcGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTTAATTCAATACGCCGGAAGTAGAAGGGAAAGACGACGTTTCCGGTGAAGAACTGACTACCCGGAAAGACGATCAGGTAGAGACCGTACGTAAACGTCTggg > 2:884916/1‑139 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCCATACGCCGAAAGTAGAAGGCAAAGACGACGTTGCCGGTGAAGAACTGACTACCCGGAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg > 8:57055/1‑140 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg > 8:836036/1‑140 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGGGAAGAACTGACTACCCCTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGGTg > 2:706529/1‑140 (MQ=255)
cgcgTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGCACTGCCTACCCGGAAAGACGATCAGGAAGAGACCGTACGTAAACGGCTGGTTGa > 4:380594/1‑140 (MQ=255)
gcgTTCACGCGCCGTGGGGCCGTTTTTAACACGTAAACTACCAACCGCCGAAAGTAGAAGCCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 1:1112732/140‑1 (MQ=255)
gcgTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 3:1088564/140‑1 (MQ=255)
gcgTTCACGCGCCGTCTGGTCGTGGTTATCACGGTAAATTCAAACCCCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACAGACTACCCGTAAAGACGATCAGGAAGAGACCGGACGTTAACGTCTGGTTg > 6:935531/1‑138 (MQ=255)
cgTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGCAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 8:640217/140‑1 (MQ=255)
cgTGCACGCGCCGTCTGGGCGGGTTTATCCCGTTAAATTCAATCCGCCGAACGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGa < 5:194739/138‑1 (MQ=255)
ttCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 2:733463/140‑1 (MQ=255)
gcgcCGTCTGGTCGTTTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 7:594147/140‑1 (MQ=255)
ccGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAg < 6:159951/138‑1 (MQ=255)
ccGTCTGGGCGTGTTTATCACGTAAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAg < 6:736824/138‑1 (MQ=255)
ccGGCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCCAATGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAGCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt < 8:445818/140‑1 (MQ=255)
tttATCACGTTAAATTCAATACGCCCAAAGTAGAAGGCAAAGACCCCGTTACCGGTGAACAACTGACTACCCCTAAAGAAGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAACATCAGATAACTTCACCGCTg > 7:351577/1‑140 (MQ=255)
tttATCACGTTAAATTAAATCCGCCGAAAGTAGACCGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTg < 4:754027/140‑1 (MQ=255)
ttATCACGTTAAATTCAATCCGCCGATCGTCTACGGCAAAGACGACGTTTCCGGTGAAGAACTGACTACCCGTAAAGACGCTCAGGAAGAGACCGGACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 3:970773/140‑1 (MQ=255)
ttATCACGTTAAATGCAATCCGCCGAAAGTAGAAGGCAAAGACGACGGTACCGGGGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 2:1039230/140‑1 (MQ=255)
tATCACGTTAAATTGAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACAGACTACCCATAAAGAACATCAGGAAGATACCCTACCTTAAAGTCTTGGTTAAAAACATCAAATGACAGCACCGCta > 6:96018/1‑137 (MQ=255)
aTCACGTTAAATTCAATCCGCCGAAAGTTCACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATc < 1:10459/140‑1 (MQ=255)
aTCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATc < 2:632099/140‑1 (MQ=255)
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GCGTACCATTCCGCAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATC > NZ_CP022686/4056812‑4057088
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
