Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,056,962 |
C→A |
16.1% |
F137L (TTC→TTA) |
adk → |
adenylate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,056,962 | 0 | C | A | 16.1%
| 178.9
/ 3.7
| 115 | F137L (TTC→TTA) | adk | adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base C (20/67); new base A (17/7); total (41/74) |
| Fisher's exact test for biased strand distribution p-value = 3.69e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
AGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACT > NZ_CP022686/4056826‑4057095
|
cggcagACGCGCTGAAAGCAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAAt < 6:230527/139‑1 (MQ=255)
gcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATCACGGTAAATTCaaa > 7:569138/1‑137 (MQ=255)
gACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATccgcc < 6:829933/140‑1 (MQ=255)
gACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATccg < 2:388282/138‑1 (MQ=255)
cgcgATGACAGAAGCGGGCATCAATGTTGAATACGGTCTGGAATTCGACGTCCCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGCTCACGCGCCGTCTGGGCGTGTTTATCACGTTAAAATCAATCCGCCGa < 4:330055/140‑1 (MQ=255)
cgcgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATccgcc < 2:534068/138‑1 (MQ=255)
cgcgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATccgcc < 7:438646/138‑1 (MQ=255)
cgcgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGa < 3:623819/140‑1 (MQ=255)
cgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGa > 1:191496/1‑138 (MQ=255)
gatagaagCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAg < 3:189780/137‑1 (MQ=255)
gAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGt < 1:841394/138‑1 (MQ=255)
aaaGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACGTTAAATTCAATGCGCCGAAAGtt > 2:762464/1‑137 (MQ=255)
aagCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAg < 7:266751/138‑1 (MQ=255)
cGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCAAGCGCCGTCTGGTCGTGTTTTTAACGTTAAATTGAATCCTCCGAAAGTATAATGaaaa > 6:406238/1‑140 (MQ=255)
aTCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTTAATTAAATCCGCCGAAAGTAGAAGGCaaaaccga > 3:519698/1‑135 (MQ=255)
cAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAAGGTAAATTCAATACGCCGCAAGTAGAAGGCAAAgacgc > 7:552206/1‑137 (MQ=255)
aTGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGGTAAATTAAATACGCCGAAAGTAGAAGGCAAAGacgacg > 7:560161/1‑138 (MQ=255)
gTTGATTACGTTCTGTAATTCGACGTACCGGACGAACTGTTTGTTGACCGTATCGTAGGCCGCCGGGTACACGCGCGGTCTGGTCGTGTTTATCCCGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGtt < 2:53674/138‑1 (MQ=255)
gTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCTTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGtt < 2:727058/138‑1 (MQ=255)
gTTGATTACGTGCTGGAATTAGCCTTCCCGCACGAACTGATTGTTGACCGTATCGGAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTCTCACGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTAc < 4:41892/140‑1 (MQ=255)
aTTACGTTCTGGAATTCTAAGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGACGTGTTTTTAACCTTAAATTCAATACGCCGAATTTAGTAGGGAAAGAAGACGGTAACGGt > 4:808067/1‑140 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTTAATTAAATACGCCCAAAGTAGAAGGCAAAGACGACGTTAACggg > 3:578873/1‑139 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTCAATCCGCCGAAAGTATAATGAAAAGACGCCGGTACCggg > 5:192665/1‑139 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGGTAAATTAAATCCGCCCCAAGTAGAAGGCAAAGACGACGTTAcccgg > 3:599290/1‑137 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCAAGCGCCGTCTGGTCGTGTTTATATCGTTTAAGTCAATGCGCCGGAAGTAGAAGGGAAAGCCGACGTTACCg > 1:366901/1‑138 (MQ=255)
ttccGTACTGGAATTCGCCGTACCGCACTAACTGATTGTTGCCCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTGGTGTTTAGCACGTTAAATTCAATCCGCCGAATGTAGAAGGCAAAGACGACTTTACCgg < 7:154466/135‑1 (MQ=255)
ttACGTTCTGTAATTCGACGTACCGGACGAACTTATTTGTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGGGGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTg < 3:827226/140‑1 (MQ=255)
ttACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCgg > 1:809652/1‑138 (MQ=255)
tACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTACATACCCCCAAAGAACAAGGCAAAGCCCACGGTACCGGt > 2:350850/1‑138 (MQ=255)
tACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAACTTAAAATCAAACCGCCGAAACAAGAAAGCAAAAACGACCGTACCGGt > 1:782667/1‑138 (MQ=255)
ttCTGGAATTCGACGTACGGGACGACCGTATGGTTGCCCGTTCCGTCGGCCGCGGCGTTCAGGCGCCGTCTGGTGGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTgaag < 2:161661/138‑1 (MQ=255)
tgcTGGAATTCGACGTACCGGACCAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTgaag < 8:399046/136‑1 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAAAGTTAAATTAAATACGCCGAAAGTATAAGGCAAAGACGAAGTTACCCGTGAAGAAc > 6:60734/1‑140 (MQ=255)
gAATTCGACGTACCTGACGAACTTATTGTCTACCGTACCGTAGGCCGCCGCGTACACGCGCCGTCTGTTCGTTTTTATCACGTTAAATTAAATCCGCCCAAAGTAGAAGGCAAACACGACGTTACCGGTGAAGAACTg < 8:758362/138‑1 (MQ=255)
gAATTCGACGTACCGGACTAACTGATTGTTCACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTg < 2:543900/138‑1 (MQ=255)
ccGGACTAACTTATTGTTGACCGTTTCGTTGGCCGCCGCGTTCACGCGCCGTCTGGTGGTGTTTATCACGTTAAATTAAATCCGCCTAAAGTAGATGGCAAAGACGACGTTAGCGGTGAAGAACTGACTACCCGTAAAGa < 4:731138/140‑1 (MQ=255)
ccGGACGAACTTATTGTTGACCGAATCGTAGGCCGCGGCGTGCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTTGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 3:100694/140‑1 (MQ=255)
ccGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTaaa < 7:741748/138‑1 (MQ=255)
ccGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTaaa < 8:148030/138‑1 (MQ=255)
ccGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTCCACGCGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCTAATGTAGAAGCAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 5:793957/140‑1 (MQ=255)
gtaCGAATTTATTGTTGACCTTTTCGTAGGCCGCGGCGTTCACGCGCGGTCTGGTGGTGTTTATCACGTTAATTTAAACCCGCCTAAATTATAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 5:60734/138‑1 (MQ=255)
cctaaCTGATTGTTGACCGTATCGTCGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 1:228567/135‑1 (MQ=255)
cagAAGTGTTTGTTGACCGTATCGCAGGCCGCCGCGTTCACGCGCGGTCTGGTGGTGTTTATCACGTTAAATTCAATCCGCCGAATGTATAAGGCAAAGACGACGTTACCTGTGAAGAACTGACTACCCGTAAAGACg < 8:1170/136‑1 (MQ=255)
aCGAACTTATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 2:342402/138‑1 (MQ=255)
aCGAACTGATTGTTGACCGTCTCGTAGGCAGCCGCGTTCACGCGCCGTGTGGTCGTGTTTATCCCGTAAAATTCAATCCGCCGAAAGTAGTAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 7:680690/138‑1 (MQ=255)
aCTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACCGTAAATTCAATCCCCCGAAAATAGAAGGCAAAGACGACGTTACCCGGGAAGAACGGCCGACCCGAAAAGACGATCCgg > 3:619005/1‑140 (MQ=255)
cTGATTGTTGACCGTATCGTAGGCCGCCGCGATCACGCGCCGTCAGGTCGTGGATAACACCTTAAATAAAAAGAGGCCAAACTCGAAGTCAAACACCACGGTAACGGGGAATCACTGAAAACCCGAAAAGACCATccatc > 4:250794/1‑136 (MQ=255)
gATTGTTTACCGTAGCGTCGGCCGCCGCGTTCACGGGCCGGCTGGTCGTGTTTATCACGTTAAATTCAAGCCGCCGAACGTCTACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGa < 7:485135/138‑1 (MQ=255)
tttgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGaa < 2:878053/137‑1 (MQ=255)
cttgttgACCGTTTCGTAGGCCGCCGCGTTCCGGCGCCGTCTGGGCGTGTTTATCACGTTAAATTCACTCCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGaa < 2:486482/137‑1 (MQ=255)
ttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTTTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 3:796775/140‑1 (MQ=255)
ttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAACGTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGAAGTTACCGGTGAAGAACAGACTACCCGGAAAGACGATCAGGAagagc > 2:356674/1‑137 (MQ=255)
ttgACCGTAGCGTAGGCCGCCGCGTTCAGGCGCCGGCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCGAATGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAgaga < 1:102498/138‑1 (MQ=255)
gACCGTATCGTAGGCCGCCGCGATCACGAGCGGTCTGGTCGTGTTTATCAAGCTTAATTAAATGCCCCGAAAGTATAAGGCCAAGACCAAGTTTCCGGGGATGAACGGACTACCCCTAAAGCCGATTAGGAATCGACcgt > 4:734310/1‑140 (MQ=255)
ccGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTTTTACGGTTAATTAAATACGCCCCAAGTTGAAAGCCAAAACGCCGTTTACGGGGGAGAAAAGGCTACCCCTAAATCCGAACAGGAAGAGAccct > 8:447525/1‑136 (MQ=255)
cGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAACGTTTAATTAAATACGCCGAAATTATAAGGCAAATACGACGTTAACCGGGAAAAAATGACTTCCCCGAAAAACGATCACGAATAGACcgta > 1:80196/1‑138 (MQ=255)
gTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATAACGGTAAATTAAATAAGCCGAAAGTAGAAGGCAAAGACGACGTTTAAGGTGAACTTCTGACTAACCCTGAAGACGATCACGCAGAGACcgtacct > 4:792296/1‑138 (MQ=255)
cctCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATACAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgtacgta < 4:469333/138‑1 (MQ=255)
atcggcggCCGCCGCTTTCACGCGCCGTCTGGGCGTGTTTATCCCTTTAAATAAAATCGGCCGAATGTTGAAGCCAAACCCGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTaa < 3:844850/134‑1 (MQ=255)
tggCCGCCGCGTTACCGCGCCGTCTGGTCGGTTTTATCACGTAAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 5:129910/139‑1 (MQ=255)
cggCCGCCGCGTGCACGCGCCGTCTGGTCGTGTTTAACACGTTAAATTCAATCCGCCTAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACg < 2:435423/137‑1 (MQ=255)
cgccccccgcGTACACGGGCGGGCTGGTCGGTTTTATCACTTTAAATTCATTCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGCTCAGGAAGAGACCGTACGTAAACGTc < 3:315194/134‑1 (MQ=255)
ccgccgCGTTCACGCGCCGGCTGGTGGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCt < 1:766437/138‑1 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGTTTATCACGATAAATTCAATCCGCCGAAAGTAGAAGGCAAAGCAGACGTTACCGGTGCAGAACAGACTACCCCTAAAGACGATCAGGAAGAGACCGTACGGAAAAGTcagtt > 2:882673/1‑134 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGGTTTTCACGGTAAAATGAATCCGCCGCAATTAGAAGGCAAACACGACGGTAACGGTGTAGAAATGGCTACCCGGAAAGACCATCACGAAGAGACCCTTCGTAAACGGCAGGt > 2:766437/1‑138 (MQ=255)
gcgTTCCCGCGCCGTCTGGTGGTGTTTATCACGTTAAATTCAAACCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCATGAAGAGACCGTACGTAAACGTCTGGTTg < 7:575183/138‑1 (MQ=255)
gcgTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 3:181290/140‑1 (MQ=255)
gcgTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATACGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTGAAGACGATCAGGAAGAGACCGTAAGTAAACGTCGGGttt > 8:427276/1‑137 (MQ=255)
gcgTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGAATGTAGAATGCAATGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg < 1:205147/138‑1 (MQ=255)
gcgTTCACGCGCCGTCTGGTCGTGGTTATAACGTTAAATTGAATCCGCCGAAAGTAGAATGCAAAGACGACGTTACCGGGGAAGAACTGACTACCCCGAAAGACGATCATGAACAGACCGTAAGTAAACCTCTGGTTg > 2:292628/1‑138 (MQ=255)
gcgTTCACGCGCCGTCGGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 5:437581/140‑1 (MQ=255)
ccgTACACGCGCCGTCTGGGCGGGTTTATCACGTTAATTTCAATCCGCCGAAAGTACAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 6:47017/139‑1 (MQ=255)
ggTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGa < 1:293140/137‑1 (MQ=255)
cgTTCACGCGCCGTCTGTGCGTTTTTATCACTTTATATTCAATCCCCCTAAAGTACAAGCCTACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGa < 1:478168/138‑1 (MQ=255)
cgTTCACGCGCCGTCTGGTTGTGTTTATCACGTAAAATTCAATCCCCCGAAATTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 3:559298/140‑1 (MQ=255)
cgTTCACGCGCCGGCTGGTCGTGTTTATCACGTAAAATTCAACCCGCCGAAAGTATAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 3:303694/140‑1 (MQ=255)
cgTGCACGCGCCGGCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTATACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 5:420494/140‑1 (MQ=255)
ttCACGCGCGGTCTTGTGGTGTTTATCATGTTAAATTCAATCCGCCTAAAGAAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 5:95655/140‑1 (MQ=255)
ttCACGCGCCGTGGGTGCGTGTTTAGCACTTTAAATTCAATCGGCCTAAAGTAGATGGCAAAGTCGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 2:524964/138‑1 (MQ=255)
tccccgcgCCGTCTGGTAGGGTTTAACACTTTAACTTCAACCCCCCCAACTTAGAAGGCAAACACGCCGTTACCGGCGAAGAACTGACTACCCGTAAAGACGAGCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 5:15028/136‑1 (MQ=255)
aCGCGCGGTCTGGTCGTGTTTATCACGTTAATTTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAcc < 7:85402/138‑1 (MQ=255)
gggcCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 4:431136/138‑1 (MQ=255)
cgcCGTGTGGGCGGGTTTAGCACGTAAAATTAAATCTGCCGAAAGTAGAAGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAg < 4:445187/140‑1 (MQ=255)
ccGTCTGGTCGTGTTTATCCCTTTAAATACAATCCGCCTAAATTATAAGCCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt < 3:176021/140‑1 (MQ=255)
ccGTCTGGTCGTGTTTATCACGTAAAATTCAATCCCCCGAAAGTATAATGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt < 3:179931/140‑1 (MQ=255)
tGGTCGTGTTTATAACGTTAAATTCAATCCGGCGAAAGTATAAGGCCAAGACGCCGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAAAGTCTGGTTTAATAACAACAGATGAc > 2:566833/1‑138 (MQ=255)
gTCGTGTTTATCACCTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTTCGTAAACGTCTGGTTGAATACCATCAGATGAATGCa > 6:8660/1‑140 (MQ=255)
gcGTGTTTATCCGGTTAAATTCAACCCGCCCAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTACACGTCTGGTTGAATACCATCAGATGACTGCAc < 6:305855/139‑1 (MQ=255)
tttttgaCGTTAAATTAAAACCGCCCAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATAAGGAAGAGACCGTACGTAAACGTCTGGTTGATTACCATCAGAAGACAGCTCCGCTg > 6:522635/7‑140 (MQ=255)
gttttCACGTTAAATTCAATCCGCCGCAAGTATAAGGCAAAGACGACCGTAACGGTGAAGCAAGGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAAACTCTGGTTGAATACCATCAAATTAATGCACCGCTg > 4:241853/5‑140 (MQ=255)
ttATCACTTAAAAGTCACACCCCCGAAAGTCGAAGGCAAAGACGACGTTACCGGTGAAGAACTGCCTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 4:448111/140‑1 (MQ=255)
tATCACGTTAAATTCAATACGCCCAAAGTAGAATGCAAAGACGACGTTACCGGGGAAGAACTGACTACCCCTAAAGACGATCAGGAAGAACCCGTACTTAAACGTCTGGTTGAAAACCATCAGATGACATCACCGCTGAt > 6:443379/1‑140 (MQ=255)
tttAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 5:262104/139‑1 (MQ=255)
gTTAAATTCCACCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAACCGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGc < 8:102572/138‑1 (MQ=255)
gTTAAATTCAATCCCCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGc < 7:696265/138‑1 (MQ=255)
ttAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGct < 2:809652/138‑1 (MQ=255)
ttAAATTCAATCCGCCCAAAGTAGACGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGct < 7:106533/138‑1 (MQ=255)
ttAAATGCAATCCGCAGAACGTAGCCGGCAAAGACGACGTTACCGGTGAAGAACGGACTACCCGTAAAGACGAGCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGct < 8:569138/138‑1 (MQ=255)
tAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt < 5:646896/117‑1 (MQ=255)
tAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt > 6:646896/1‑117 (MQ=255)
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AGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACT > NZ_CP022686/4056826‑4057095
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
