Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,056,962 |
C→A |
17.7% |
F137L (TTC→TTA) |
adk → |
adenylate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,056,962 | 0 | C | A | 17.7%
| 187.6
/ 8.0
| 131 | F137L (TTC→TTA) | adk | adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base C (34/62); new base A (21/7); total (61/70) |
| Fisher's exact test for biased strand distribution p-value = 4.00e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 134 total aligned reads displayed.
CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACTACTC > NZ_CP022686/4056825‑4057099
|
aggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAAt < 2:957796/140‑1 (MQ=255)
ggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGCCCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATGACGGTAAATTCaa > 6:495691/1‑138 (MQ=255)
ggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGttaaattaaa > 5:164755/1‑138 (MQ=255)
gcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACCTTAAATACAAtac > 3:875348/1‑138 (MQ=255)
gcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTGATCACGTTAAATTGAATcc > 1:773733/1‑140 (MQ=255)
cgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGGTTATCGCGTTTAATTAAATCCGCCGa > 6:6706/1‑138 (MQ=255)
cgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTAAATTGAATgcgccgc > 6:420078/1‑137 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTa < 3:241620/140‑1 (MQ=255)
gAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGt < 6:792834/138‑1 (MQ=255)
aaaGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGCAACTa > 6:236541/1‑138 (MQ=255)
agaagCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCCCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTATAATTGAATACCGCGAAAGTTGaaa > 1:317015/1‑139 (MQ=255)
aagCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAAACTTAAATTCAATACGCCGAAATTAGAAGGc > 7:304572/1‑140 (MQ=255)
gCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATACCGTTTAATTAAATACCCCCAAATTAGAAGGCaa > 8:197068/1‑140 (MQ=255)
ggggCATCAATGTTTATTACGTTCTGGAATTCTACGTACCGGACGAACTGATTTTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCTAAAGTAGAAGGCaaa < 4:70873/139‑1 (MQ=255)
gggCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGGTCACGCGCCGGCTGGTCGTGGTTTTAACGTTTAATTAAAAACGCCGAAAGTAGAAGGcca > 5:194096/1‑136 (MQ=255)
gTTTATTACGTTCTGGAATGCGCCGTCCGGGAGGATATTATTGTTGACCGTACCGTCGGCCGCCGCGTTCACGGGCCGTCGGGTCGGGTTTATCACGTTAAATTCAATCCGCCGAAAGTCGACGGCAAAGACGA‑CGTTAc < 2:343872/140‑1 (MQ=255)
gTTGATTACGTTCTGTAATTCGACGTACCGGACGAACTTATTGTTGACCGAATCGTAGGCCGCCGCGTTCACGCGCGGGCTGGTCGTGTTTATCACGTTAAATTCAATCCCCCTAACGTATAAGGCAAAGACGA‑CGtt < 5:141822/138‑1 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTCAATCCCCCGAAATTATAAGGCAAAGCCGC‑CGTTACCggg > 2:814432/1‑139 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTCAATCCGCCGAAAGTAGAAGGCAAATACGA‑CGTTACCGGt > 8:92164/1‑140 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACCGTAAAAAAAATCCGCCCAAATTAGAAGGCAAAGACGA‑CGGTAACGGt > 1:513720/1‑140 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACGTTAAATTAAATCAGCCGAAAGTAGAAAGCAAAGACTC‑CCTTACCggg > 7:767587/1‑139 (MQ=255)
ttACGTTCTGTAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTg < 7:511774/140‑1 (MQ=255)
tACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAAAGTTAAATTCAATCCGCCGAAATGAGAAGGCCAAGACGA‑CGTTAcccgggg > 7:504044/1‑135 (MQ=255)
ggtCTGGAATTCTACGTACCGGACGAACTGATTGTTGACAGTATCGTAGGCCGCCGCGTTCACGCGCCGTATGGTCGTGTTTATCACGATAAATTCAATACGCCGAAAGTATAATGCAAAGACCA‑CGTTAACGGTtaagc > 8:591062/3‑139 (MQ=255)
gTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATCACGTTTAATTAAATCCGCCGAAATTAGAAGGCAAAGACGC‑CGTTACCGGTgaaga > 8:445955/1‑140 (MQ=255)
ttCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGGTATAACGTTAAATTCAAACCGCCGAAAGTATAAGGCCAAGCCGA‑ACTTACCCGTgaagaa > 3:212317/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTCAATCCGCCGAAAGTATAAGGCAAAGAACA‑CGTTACCGGTGAAGAAc > 4:556325/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAAGCAAAAACGACCGTCACC‑GTgaaga > 6:361184/1‑138 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTAAATTTAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAAc > 3:673200/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGGGATTATAACGATAAAATCAAACCGCCGCAAGTAAAACGCAAAGACGC‑CGTGACCCGTgatgc > 5:862113/1‑135 (MQ=255)
cTGGAATTCGACGTACCGGACTAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTgaagaa < 6:645998/138‑1 (MQ=255)
tGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAAGTTAAATTCAATACGCCCAAAGTAGAAGGCCAATAAGC‑CGTTTCCGGTGAAGCAc > 5:730512/1‑138 (MQ=255)
gAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCTAAAGTAGAAGGAAAAGACGA‑CGTTACCGGTGAAGAACTGAc < 1:253037/140‑1 (MQ=255)
gAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGAc < 2:79466/140‑1 (MQ=255)
gAATGCGACGTACCGGCCGAACTGATTGTTGACCGTATCGTCGGCCGCCGCGTTCACGCGTCGTCTGGGCGGGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGAc < 8:737717/140‑1 (MQ=255)
aaTTCGACGTCCCGGACGAACTGTTTGTTCACCGTATCGTAGGCCGCCGCGTTAACGCGCGGGCTGGTCGTTTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACt < 1:143893/140‑1 (MQ=255)
aaTTCGACGTACCGGCCGACCTGATTGTGGACCGAATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGGCGTGTTTATCACGTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACt < 4:70782/140‑1 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACCTTAAATTCAATCCGACCGAAGTAGAAGGCAAACACGA‑CCTTACCCGGGAAAAACTggcaac > 5:607574/1‑133 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTAAATTAAATCCGCCGAAAGTAGAATGCAAAGCCGA‑CGGTACAGGTGAATACCTGAcaaacc > 3:752788/1‑135 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACAGTATCGTAGGCCGCCGCGTTAACGAGCCGTCAGGTCGTGTTTATAACGTTAAAATAAATACCCCGAAAAAATAAAGCAAAGACGA‑CTTTTAAGGTGAAGAACAGACTAccc > 8:270576/1‑140 (MQ=255)
aCGTACAGGACGAACTGATTGTTGACCGTATCGTAGGCCCCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTGAAATTAAAACCGCCGAAAATAGAAGGCAAAGTCCA‑CCATACCGGAGAAGAACAGACTAccc > 5:99578/1‑138 (MQ=255)
tACCGGACTAACTTATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGTTTAAATTCAATCCGCCGAAAGTATAAGCAAATGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTaaa < 1:7356/140‑1 (MQ=255)
aCCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTAAATACGCCGAAAGTAGAATGCAAAGACGC‑CGTTACCGGTGAAGAACGTACTAccccgtaat > 2:540386/1‑134 (MQ=255)
cgggACGAACTGTTTGTTGACCGTTTCGTCGGCCGCCGCGTTCACGCGCCGTGTGGGCGTGTTTTTCAGGTTAAATTCAATCCGCCGAAAGTAGAAGCCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 3:537590/138‑1 (MQ=255)
ccGGAGTAACTGAATGTTGACCTAATCGTAGGCCGCCGCGTTCACGCTCCGTCTGGTCTTGTTTATAACGTTAAATTGAATCCGCCGAAAGTTGATTGCAATGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 8:88345/140‑1 (MQ=255)
ccGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCTTCGGGTCGTGTTTATCACTTTAAATTCAATCCGCAGAAAGTAGAAGGCAAACACGA‑CGTTACCGGTGAAGAACTGACTACCCGTaaa < 5:26810/138‑1 (MQ=255)
ccGCACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATCCCGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 2:819119/140‑1 (MQ=255)
gACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCGCGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGa > 2:815468/1‑140 (MQ=255)
cggAAGTGATTGTTCACGGTAGCGTTGGCCGCCGCGTTCACGCGGCGTCGGGTCGTTTTTATCACGTAAAATTCAATCCGCAGAAATTATTAGGAAATGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:111370/138‑1 (MQ=255)
actaaCTGATTGTTGACGTTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGGGGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:18654/137‑1 (MQ=255)
acaaaatGATTGTTGACCGTATCGTAGGCCCCCGCGTTCACGCGCGGTCTGGGCGTGTTTATCACGTTAAATTCAATCCGCCGAAATTAGACGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:854885/134‑1 (MQ=255)
aCGTACTGATTGTTGACCGTTTCGTAGGCCGCCGCTTTCACGGGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCGAATGTATAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:100837/140‑1 (MQ=255)
aCGAACTGATTGTTGACGTTATCGTCGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTTTTTATCACTTTAAATTAAATCCGCCGAAATTAGATGCCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:556325/140‑1 (MQ=255)
aCGAACTGATTGTTGACGTTATCGTAGGCCGCCGCTTGCACGCGCCGTCTGGTGGTGTTTATCAGGTTAAATTAAATCCGCCGAAAGTATAAGGAAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 8:304572/140‑1 (MQ=255)
aCGAACTGATTGTTGACCGTATCTTAGGCCGCCGCTTGCACGCGCCTTCTGGTGGTGTTTATCACTTTAAATTAAATCCGCCGAAAGTAGAAGTAAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 5:236541/138‑1 (MQ=255)
aCGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTTGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:256079/140‑1 (MQ=255)
tGATTGTTGACCGTATCGTAGGCCGCCGGGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAATGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGaa < 1:921734/140‑1 (MQ=255)
tGATTGTTGACCGTATCGTAGGCCGCCGCGATCACGCGCCGTCTGGTCGTTTTTATCACGTTAAATACAATCCGCCTAAATTAGAAGCAAACGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGaa < 4:922712/140‑1 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTAAATACGCCGCAAGTAGAAGGCAAAGACGC‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACCATCCGGAAgaga > 1:213397/1‑140 (MQ=255)
ttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTTTCACGTTAAATTCAATCCGCCGAATGTAGAAGGCAACGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 7:261078/140‑1 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCAGGCGCCGTCTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgt < 2:709283/140‑1 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTGAATACCCCCAAACTAGAAGGCAAAGACGC‑CGGTACCGGTGAATCACTGACTACCCGGAAAGACGATCAGGAAGAGACcgg > 7:166353/1‑139 (MQ=255)
gTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATACGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGGCAACCCGTAAAGACGATCAGGAAGAGACcgtacct > 4:1039802/1‑138 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTGTATCACGTTAAATTCAATACGCCGAAAGTAGAATGCAAAGACGA‑CCTTACCCGGGAAGAACAGACTACCCGGAAAGACGATCAGGAATGGACcgttcgt > 8:611558/1‑140 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGCTCGTGTTTATCACGTTAAAATAAAACAGCCCAAAGAAGAAGGCAAAGACCA‑CGTTAACGCGCAAAAAATGGCTACCCCTAAACACAATCAGGAAGAGACcctgcgt > 2:671686/1‑140 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGACTGGTCCTGTTTTTAAAGTTTAAATAAATCCCCCGAAAGTATAACGCAAAGAAGC‑CGGTTCCGGTGAAGAACAGACTACCCGTAAAGCCGCTCACGTAGCGTCcgttagg > 7:773909/1‑136 (MQ=255)
tATCGTCGGCCGCCGCGTTCACGCGCGGTGTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCTAAAGTCGAAGCCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgtacg < 5:598693/138‑1 (MQ=255)
cGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAAGTTAAATTAAATACGCCGAAAGTATAAAACAAAAACGA‑CGTTAACGGTGAACAACAGACAAAACGAAAATACGAAAAAGAAGAGACAATACGTaaaa > 2:487909/1‑139 (MQ=255)
cggCCGCCGCTTTCACGCGCCGTTTGGTCGTGTTTATAACTTAAAATTCAAACCGCCGAAAGTACACGGAAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACg < 5:375066/137‑1 (MQ=255)
cggCCGCCGCGTTCACGCGCCGTCGGGGCGTGTTTATCACGTTAAATTCACTCCGCCGAAATTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACg < 6:106368/137‑1 (MQ=255)
cggCCGCCGCGTTCACGCGCCGGCTGGGCGTGTTTATCACTTAAAATTCATTCCGCCGAACGTAGAAGGCAAAGCCGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 8:203728/139‑1 (MQ=255)
cgccgcGTTCACGCGCCGTCTGGTCGTGTTTTTACCCTTAAAATAAATACGCCCCAAGTATAAGGCAAAGACGC‑CGTTACAGGGGAAGAACTGACTACCCGTAAAGACGATCATGAAGAGACCCTAAGTGACCGtgtgtg > 2:623042/1‑138 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCCATACGCCGAAAGTAGAAGGCAAAGACGA‑CGTTGCCGGTGAAGAACTGACTACCCGGAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg > 8:57055/1‑140 (MQ=255)
ccgcGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg > 8:836036/1‑140 (MQ=255)
gcgTTCACGCGCCGTGGGGCCGTTTTTAACACGTAAACTACCAACCGCCGAAAGTAGAAGCCAACGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 1:1112732/140‑1 (MQ=255)
gcgTTCACGCGCCGTCTGTTCGGTGTTATCACGTTAAAAACAATCCGCCCAACGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg < 6:916119/138‑1 (MQ=255)
gcgTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAACGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 3:1088564/140‑1 (MQ=255)
gcgGTCACGCGCCGTCTGTGCGTGGTTATCACGTTAAATTCAATCCGCCGAATGTTGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg < 6:688764/138‑1 (MQ=255)
cgTTCCCGCGCGGTCTGGTCGTGTTTATAACGTTAAATAAAATCCGCCTAAAGTAGATGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGa < 6:593437/138‑1 (MQ=255)
cgTGCACGCGCCGGCTGGTCGTGTTTATCACGTAAAATTCAAACCGCCGAAAGTATAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 2:279962/140‑1 (MQ=255)
ttCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAACACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 2:733463/140‑1 (MQ=255)
tgcACGCGCCGTCTGTGCGTGTTTATAACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 3:94015/138‑1 (MQ=255)
tgcACGCGCCGTCTGGTGGTTTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 7:611558/138‑1 (MQ=255)
ccGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAg < 6:159951/138‑1 (MQ=255)
ccGTCTGGGCGTGTTTATCACGTAAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAg < 6:736824/138‑1 (MQ=255)
ccGGCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCCAATGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAGCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt < 8:445818/140‑1 (MQ=255)
tGGTCGTTTTTATCACTTTAAATTCAATCCGCCTAATGTATAAGGAAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTg < 1:20344/140‑1 (MQ=255)
tttATCACGTTAAATTCAATACGCCCAAAGTAGAAGGCAAAGACCC‑CGTTACCGGTGAACAACTGACTACCCCTAAAGAAGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAACATCAGATAACTTCACCGCTg > 7:351577/1‑140 (MQ=255)
tttATCACGTTAAATTAAATCCGCCGAAAGTAGACCGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTg < 4:754027/140‑1 (MQ=255)
ttATCACGTTAAATGCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGGTACCGGGGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 2:1039230/140‑1 (MQ=255)
tATCACGTTAAATTGAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACAGACTACCCATAAAGAACATCAGGAAGATACCCTACCTTAAAGTCTTGGTTAAAAACATCAAATGACAGCACCGCta > 6:96018/1‑137 (MQ=255)
aTCACGTTAAATTCAATCCGCCGAAAGTTCACGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATc < 1:10459/140‑1 (MQ=255)
aTCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATc < 2:632099/140‑1 (MQ=255)
ccGTTAAATTCAATCCGCCCAAATTAGAAGTCAACGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGc < 7:5615/139‑1 (MQ=255)
tttAAATTCAATCCGCCGAAAGTCGAAGCCAACTACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 1:77068/139‑1 (MQ=255)
gtaaaaTTCATTCCGCCGAAATTAGAAGGCAAACACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 7:187907/137‑1 (MQ=255)
ttAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGACCTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac > 8:709692/1‑140 (MQ=255)
tAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctact > 1:214152/1‑140 (MQ=255)
ttCAATCCCCCGAAAGAACAAGGCAAAGAAGA‑CGTTACCGGTGAAGAACTGACTACCCCTAAAGACGAACAGCAAGATCCCGTACCTAAACGTCTGGACGAATACCAACAGATGACTGCACCTCTGATAGGCTACTACTc > 4:586726/1‑140 (MQ=255)
ttCAAACCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCTAAAAGACGATAAGTAAGAGACCGTACTTAAACGTCTGTTTGCTTACCATCAGATGCCTGCACCTCTGATCGGATactacta > 4:586729/1‑139 (MQ=255)
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CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGA‑CGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACTACTC > NZ_CP022686/4056825‑4057099
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
