Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,056,962 |
C→A |
19.8% |
F137L (TTC→TTA) |
adk → |
adenylate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,056,962 | 0 | C | A | 19.8%
| 156.2
/ 8.0
| 121 | F137L (TTC→TTA) | adk | adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base C (18/71); new base A (16/12); total (38/83) |
| Fisher's exact test for biased strand distribution p-value = 5.59e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 124 total aligned reads displayed.
CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACT > NZ_CP022686/4056825‑4057095
|
caggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATACCGTTTAATTaaa > 5:82053/1‑140 (MQ=255)
caggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTAAAACGTTAAAATCaa > 3:283396/1‑140 (MQ=255)
caggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCCTTCACCCGCCGTCTGGTCGTGTTTATAACGGTTAATTCaa > 5:622351/1‑140 (MQ=255)
aggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGTAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAAt < 3:776918/140‑1 (MQ=255)
aggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAAt < 4:613786/140‑1 (MQ=255)
gcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCAGGTCGTGGTTATAACGTTAAATTTaaagc > 1:1107549/1‑137 (MQ=255)
gcagACACGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAAGGtaaattaaatac > 5:936291/1‑138 (MQ=255)
agACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATCACCGTAAAATAAATccgc > 1:667571/1‑140 (MQ=255)
cgcgATGAAAGAAGCGGGCAGCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGa < 2:409629/140‑1 (MQ=255)
cgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑CGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGGCTGGTCGTGTTTATCCCCGTAAATTCAATCCGCCGcaa > 8:688275/1‑140 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATGACGTTAAATTCAATCCGCCGaaattt > 7:327374/1‑137 (MQ=255)
catgCGGGCATCATTGTTTATTACGTTCTGGATTTCGACTTACGGGACGAACTTAT‑TGTTGACCGTTTCGTAGGCCGCGGCTTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAATTAGAAgg < 4:867459/137‑1 (MQ=255)
agCGGGAATCAATGTTGATTCCGTTCTGTAATTCGAGGTACCGGACGAAGTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGACTGGTCGTGGTTATCAGGTTAAATTCAATCCGCCGAAAGTAGAAGGCa < 5:614057/140‑1 (MQ=255)
gggCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGGTAAATTAAAAACGCCGCAAGTTGAAGGCaaaa > 5:139235/1‑139 (MQ=255)
gCATCATTGTTGATTTCGTTCTGGATTTCGACTTACCGGACGAACTGAT‑TGTTGACGGTATCGTTGGCCGCCGGGTTCACGCGCCGGCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAATGTAGAAGGCAAAgac < 6:880199/140‑1 (MQ=255)
gCATCAATGTTGATTACGTTCTGGAATTCGACGTACGGGACGTACTGAT‑TGTTGACCGTATGGTAGGCCGCGGCGTGCACGCGCCGTCTGGTCGTTTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAgac < 2:618431/140‑1 (MQ=255)
gCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAACGTTAAATTAAATACGCCGAAAGTTGAAGGCAAAtac > 5:87425/1‑140 (MQ=255)
cAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACGTTAAATTAAATACGCCGAAATTAGAATGCAAAgacgacc > 3:191036/1‑139 (MQ=255)
tttGATTACGTTCTGGATTTCGACGTACCGGACTAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGGTTAAATTCATTCCGCCTAAATTAGAAGGCAAAGACGACGTTAc < 1:982867/139‑1 (MQ=255)
gTTGATTACGTTCTGTAATTCGACGTACGGGACGAACTGAT‑TGTTGACCGTTTCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTTGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTAc < 4:269424/140‑1 (MQ=255)
gTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCTTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTAc < 4:452757/140‑1 (MQ=255)
gTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTAc < 4:213931/140‑1 (MQ=255)
tGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTGCACGCGCCGTCTGGTCGTGTTTAGCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCg < 8:844378/140‑1 (MQ=255)
aTTACGTTCTGGAATTCGCCGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATCACGGTAAATTCAATACGCCGAAATTATAAGGCAAAGACCAGGTTAcccgg > 8:436054/1‑137 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATAACGTTTAATTAAATCCGCCGAAAGTAGAAGGCAAAGACTACGTTAACGGt > 2:846418/1‑140 (MQ=255)
tACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAAGTTAAAATAAATACCACCAAAGAAGAAGGCAAAAGCGACCTGAACGGTgg > 3:951547/1‑139 (MQ=255)
cGTTCTGGATTTCGACGACCCGTACGAACTTTT‑TGTTGACCTTATCGTCGGCCGCGGCGTTCACGCGCCGTCGGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAACGTAGAAGGCAAAGACGACGTTACCGGTgaag < 8:975393/140‑1 (MQ=255)
gTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGCCCGGATCGTAGGCCGCCGCGTTAACGCGCCGTCTGGGCGTGTTTAGGACGTTTAATTCAATCCGCCGGAAGTTGTAGGGAAAGGCGACGTTACCggggcagt > 8:304819/1‑134 (MQ=255)
gTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTgaagg > 4:777586/1‑139 (MQ=255)
ttttGGAATTCTCCGTACCGGTCTAACTTATGTGTT‑ACGGTAGCGTAGGCCGCCGCTTTCCCGCGCCTTGTGGTCTTGTGAATCCCGTTAAATTCAATCCGCCGAAGTTATAAGGCAAAGACGACGTTACAGGTgaagaa < 8:839880/137‑1 (MQ=255)
ttCTGGAATACGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATACACTCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTgaagaa < 3:1009367/140‑1 (MQ=255)
ggAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTTGTCGTGGTTATCACGTTAAATTCAATCCGCCGAATCTAATAGGCAAAGACGAGATTACAGGTGAAGAACAGa > 8:749179/1‑140 (MQ=255)
gAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGAc < 6:212178/140‑1 (MQ=255)
gAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTAATCACGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGAc < 8:127022/140‑1 (MQ=255)
aaTTCGACGTCCCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCTTCTGGTCGTGTTAATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACt < 2:688310/140‑1 (MQ=255)
aaTTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACt < 2:898980/140‑1 (MQ=255)
aaTTCGACGTACCGGACCAACTGAT‑TGTTGACCGTATCGTTGGCCGCCGCTTTCACGCGCCGTCTTGTCGTGTTAATCACGTTAATTTCAATCCGCCGAAAGTATAAGGCAAACACGACGTTACCGGTGAAGAACTGACt < 8:552329/140‑1 (MQ=255)
ccGGAGCAACTGTT‑TGTTGACCGTATGGTAGGCCGCCGCGTTCAGGCGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCTAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 1:1101538/140‑1 (MQ=255)
ccGGACTAACTGAT‑TGTTGACCTTTTCGTAGGCCGCCGAGTTCACGCGCCGGCTGGTCGGTTTGATCACGTTAAATTCAAGCCGCCGAAATTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 6:279882/140‑1 (MQ=255)
ccGGACGAACTTAT‑TGTTGACCGTATCTTAGGCCGCCGCGTTCACGCGCGGTCTGGTCGTGTTTATCACGTTAAATACAATCCGCCTAACGTAGAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 5:471358/140‑1 (MQ=255)
ccGGACGAACTGAT‑TTTTGACCGTATCGTCGGCCGCCGCGTTCACGCGCCGTATGGTCGTTTTTTTCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 8:108199/140‑1 (MQ=255)
ccGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCCCGTTAAATTAAAACCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 8:507570/140‑1 (MQ=255)
ccGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGTTTATCAGGTAAAATTCAATCCCCCGAAAGTAGACGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 2:938975/140‑1 (MQ=255)
cctaaCTTAT‑TGTGGACCGTATCGTAGGCCGCCGCGTGCACGCGCGGTCTGGGGGTGTTTATCACGTTAAATTCAATCCGCGGAAATTAGAAGGCAATGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:485257/137‑1 (MQ=255)
actaaatGAT‑TGTTGACCGTATCGTTGGCCGCCGCGTGCACGCGCCGTCTGGTCTTGTTTATCACGTTAAATTCAATCCGCCCAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 7:291785/134‑1 (MQ=255)
aCGAAGTGAT‑TGTGTACCTTATCGTAGGCCGCCGGGGTCCCGCGCCGTCTGGTGGTGTTTACACCGTTAATTTCAATCCGCCGAAATTTGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:313424/140‑1 (MQ=255)
aCGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGAAAGTAGAAGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 4:772793/140‑1 (MQ=255)
aCGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCGGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 3:89028/140‑1 (MQ=255)
aCTGAT‑TGTGGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAgg < 4:654060/140‑1 (MQ=255)
gAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTAAATCCGCCGAAAGTAGAATGCAAAAACGAAGTTAACGGTGAATAAATGACTACCCCTAAATACGATAAGGaat > 1:336007/1‑139 (MQ=255)
tt‑tgttgACCGTATCGTTGGCCGCCGCGTTCACGCGCCGTCTGGTGGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGTCTAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAaga < 2:78757/139‑1 (MQ=255)
tgttgACCGTATCGTCGGCCGCCGGGTTCACGCGCCGTCTGGTCGTGTTTATCAGGTTAATTTAAATCCGCCGAATGTAGAGGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAgaga < 7:99556/140‑1 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAAGGTAAATTAAAGCCGCCGTAAGTCGAACGAAAACACGACGGTACCGCGCAAGAACAGACGACCCCTAAACACCATCACGAagagc > 7:919850/1‑139 (MQ=255)
tgttgACCGTATCGTAGCCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAACGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAgaga < 8:762542/140‑1 (MQ=255)
ttgACCTTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCTAAATTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 6:143209/140‑1 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAGGTTAAATTCAATCCGCCTAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgt < 1:290376/140‑1 (MQ=255)
cGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTCACGTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTTACGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcggacc > 6:895968/1‑139 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGGTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCCTAAAGACGATCAGGAAGAGACcgtacgt > 3:652273/1‑140 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATTGCGGTTAATTGAATCCGCCCAAAGGAGAAGGCAAAGACGACGGTACCGGTGAAGAACTGACTACCCGGAAAGACGAACAGGAAGTGACcgtacgt > 4:874357/1‑140 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCACGGTAAATTGAATCCGCCGAAAATAGAAGGCAAAGACGACCTTTCCGGGGAAGAACAGACTACCCGGAAAGCAGATCAGGAAGAGACcggacgt > 6:445121/1‑140 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTAGTGTTTTTAACGTTAAATTAAAAAAGCCCAAATTAGAATGCAAAGACGCCGTGACCGGTGAAGAACTGACAACCCCTAAAGACGCTCGGGAGGAGccccttccg > 8:128828/1‑134 (MQ=255)
tttggTAGGCCGCCGCGTTCACGGGCCGTGGGGTGGTGTTTACCACTTTAAATTAAATCCGCCGAAATTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgtacgta < 5:9200/136‑1 (MQ=255)
ttgcGTAGGCCGCCGCGTTCACGCGCGGGCTGGTCGTGTTTATCTCGTCAAATTAAATCCGCCGAATGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgtacgta < 6:443730/137‑1 (MQ=255)
tATCGTAGGCCGCCGCGGTCACGCGCCGGCTGGTCGTGTTAATCCCGTAAAATTAAATCCGCCGAAAGTAGACGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACcgtacgta < 1:76790/140‑1 (MQ=255)
aTCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATGACGTTTAATTCAATACGCCGAAAATAGAAGGCAAATAAGACGTTACCGGTGAAGAACAGACAACACGTAAATAAGATCAGGAAGAGCCCCTACCTaa > 3:789977/1‑140 (MQ=255)
aTCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAAGTTAAATTAAATACGCCGAAATTAGAAGGCAAAGACGACGGTACCGGGGCATAACGTACTTACCCTAAAGACGATCATGAAGAGACCGAACGTaa > 3:278075/1‑140 (MQ=255)
aTCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACAACGTTACCGGTGAAGAACAGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTaa > 6:809808/1‑140 (MQ=255)
aGGCCGCCGCGTTCACGCGCGGTCTGGTCGTGTTTATCACGTTAATTTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 6:637770/140‑1 (MQ=255)
aGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 4:469825/140‑1 (MQ=255)
aGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 6:669813/140‑1 (MQ=255)
aGGCCGCCGCGTTCACGCGCCGGCTGGTGGTGTTTATCACGTTAAATTCAATCCGCCGAAATTAGAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 3:52802/140‑1 (MQ=255)
cgccgcGTTCACGCGCCGACTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTACAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTACAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGt < 6:251005/140‑1 (MQ=255)
gcgTTAACGCGCCGGCTGGTCGTGTTTATCACGGTAAATGCAATCCGCCCAAAGTAGAAGGCAACCACGACGGTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 6:860728/140‑1 (MQ=255)
tgTTCACGGGCCGTCTTGTGGTGTTTATCAGGTTAAATTCAATCCGCCGAAAGTAGAAGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 5:688711/139‑1 (MQ=255)
cgTTCACTCGCCGTCTGGTCGTGTTTATCACTTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 7:670415/140‑1 (MQ=255)
ttCACGCGCCGTAGGTGCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 1:954265/140‑1 (MQ=255)
aCGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTCGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCAt < 7:1019426/140‑1 (MQ=255)
gcgcGGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 6:87425/140‑1 (MQ=255)
gcgcCGTGGGGTCGTGTTTTTCACGTAAAATTCAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 1:478696/140‑1 (MQ=255)
gcgcCGTCTGGTCGTGTTTATCACTTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa < 3:194595/140‑1 (MQ=255)
ccGTCTGGTCGTGTTTATCACGTTAAATTAAATCCGCCGACAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt < 4:219726/140‑1 (MQ=255)
tCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGCAGGCAAAGACGACGTTACCGGTGAAGAACAGACTCCCCGTAAAGACGATCAGGAACAGCCCGTACGTAAACGTCTGGTTGAATACCATCAGATgct > 6:688711/1‑138 (MQ=255)
tgttgtTTATCACTTAAAATTCAAACCGCCGAAATTACACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCAc < 2:179313/137‑1 (MQ=255)
tCGTGTTTATCACGTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCAc < 4:758781/140‑1 (MQ=255)
gtgtTTATCACGTTAAATTAAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCg < 4:789977/140‑1 (MQ=255)
gtgtTTATCACGTTAAATACAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCg < 8:951628/140‑1 (MQ=255)
tgtTTATCACGTAAAATTCATACCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGc < 2:864287/140‑1 (MQ=255)
ttATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 2:577663/140‑1 (MQ=255)
aTCACGTTAATTTAAAACCGCCTAAAGTACAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATc < 3:751115/140‑1 (MQ=255)
cACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGGAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCgg > 1:461923/1‑140 (MQ=255)
cACGTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCgg > 5:199095/1‑140 (MQ=255)
actttaaattaaaTCCGCCTAATGTCGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGc < 1:944524/137‑1 (MQ=255)
aCGTTAAATTCAATCCGCCGAACGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGc < 2:336007/140‑1 (MQ=255)
gTTAAATTCAATCCTCCGTACGTCGTAGGCAAAGACCTCGTTAGCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTTAACGTCTGGTTGAATACCATCAGATTACTGCACCGCTGATCGGcta < 8:317991/140‑1 (MQ=255)
gTTAAATCCATTCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGCTCGTATTTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 3:1010428/140‑1 (MQ=255)
ttAAATTCATTCCGCCTAAATTAGACGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 1:582049/140‑1 (MQ=255)
ttAAATTCACACCCCCTAAAGTAGAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 6:989688/140‑1 (MQ=255)
ttAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 4:955600/140‑1 (MQ=255)
ttAAATGAAATCCGCCGAATGAAGAAGGCAAACACGACGGTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctac < 6:573720/140‑1 (MQ=255)
tAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGctact > 3:510416/1‑140 (MQ=255)
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CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGAT‑TGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCACGTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACT > NZ_CP022686/4056825‑4057095
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
