Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,056,962 |
C→A |
18.1% |
F137L (TTC→TTA) |
adk → |
adenylate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,056,962 | 0 | C | A | 18.1%
| 248.0
/ 15.0
| 192 | F137L (TTC→TTA) | adk | adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base C (36/105); new base A (33/10); total (76/116) |
| Fisher's exact test for biased strand distribution p-value = 3.95e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 193 total aligned reads displayed.
CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACTA > NZ_CP022686/4056825‑4057096
|
caggcagACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTTTCAC‑GTTAAAATcca > 2:1114993/1‑138 (MQ=255)
gcagACGCGATGAAAGAAGCTGGCATCAATGTTGATTACGTTCTGGAAAGCGACGTTCCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATcc < 6:314933/140‑1 (MQ=255)
gACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATccg < 3:1005034/138‑1 (MQ=255)
cgATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGGCTGGTCGTGGTTATCAC‑GTTAAATTCAATccgccgc > 4:670789/1‑137 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCTCCGTCTGGTCGTGTTTATACC‑GTGTAATTACATACGCCGaaacgt > 5:169533/1‑137 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCCCCGAAAGtt > 1:487462/1‑139 (MQ=255)
tGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATACC‑GTTAAATTAAATACGCCGAAAGtt > 5:473380/1‑139 (MQ=255)
aagCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTACATCCGCCGAAAGTAGAAGGc > 6:1246043/1‑140 (MQ=255)
agCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCa < 6:760499/140‑1 (MQ=255)
gCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGa > 2:225108/1‑127 (MQ=255)
gCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGGGGTTAAAAC‑GTATAATTAAAAACGCCGAAAGTAGAATGcta > 5:968694/1‑138 (MQ=255)
gTTGATTACGTTCTGGAATTCGCCGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGTTAc < 2:82449/140‑1 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATGAC‑GGTAAATTAAATACACCGGAAAGAGAAGGCAAAGACGACGtttacggg > 1:1088350/1‑134 (MQ=255)
aTTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTATGGACGTGTTTATAAA‑GTTAAAATGAAACCGCCGAAAATATTATGCAAATAAGACGtaaaccgt > 7:1133314/1‑133 (MQ=255)
tagtttCTGGAATTCGAGTTACCGGAAGAACTTTTTTTTGACCGTTTCGTAGGCCGCCGCTTTCACGCGCCGTATGGTCGTTTTTATCAC‑GTTAAATTCAATCCGCCTAAATTAGATGGCAAAGACGACGTTACCGGTga < 2:162685/136‑1 (MQ=255)
tACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATTAC‑GTTAAATTAAATCCGCCGAAAGTAGAACGCAAAGACGACGTTAcccgg > 4:440671/1‑135 (MQ=255)
gTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTATATTAAATCCGCCGAAAGTAGCAGGCAAAGACGACGGTACCGGTgcaga > 7:213021/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAACGGTTAAATAAAAACC‑CCCAAATTAGAAGGCAAAGACCACCGTAACGGTGAAGAAc > 1:32758/1‑140 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAAC‑GTTAAATTCAATCCCCCGAAAGTAGAAGGCAAAGACGACCTTAACCGTgaaga > 3:1111871/1‑138 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGtt < 4:883349/127‑1 (MQ=255)
tCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGtt > 3:883349/1‑127 (MQ=255)
aTTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTCGGCCGCCGCGTTCACGCGCCGTCTGGGCGTGTTTATCAC‑GTTAAATTCAAACCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTa < 7:119885/140‑1 (MQ=255)
ttCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAC‑GTTAAATTGAATCCCCCGAAAGTTAAAGGGCAAGACGCCGTTAACGGGGAAGAAcagccaac > 5:1042257/1‑133 (MQ=255)
cGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GGTTAATTCAATACGCCGAAAGTAGAAGGCAAAGACGAAGTTACCGGTTAAGAACAGACTAccc > 8:874600/1‑140 (MQ=255)
cGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAC‑GTTAAATTAAATCCCCCGAAAGTTTAATGCAAAGACCCCGTTACCGGTGAAGAACATCCTACCCCTa > 5:1026067/1‑140 (MQ=255)
ccGGACGATCTGCTTGTTTACCTTAGAGTCGGCCGCGGCGTTCACGCGCCTTGTGGTCTTTTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 2:1114202/140‑1 (MQ=255)
ccGGACGATCTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTTTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGATGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGa < 2:714382/140‑1 (MQ=255)
ccGGACGAACTGATTGTTGACCGATTCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCTGGTTTATCAC‑GTTAAATTAATTCCGCCTAAATTAGATGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTaaa < 4:777485/138‑1 (MQ=255)
cGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGCCGTTACCGGTGAAGAACTGACTACCCGGAAAg > 4:333680/1‑138 (MQ=255)
ggACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTGGTTTTTATCAC‑GTTAAATTCAATCCGCCTAAATTAGATGGCAATGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 5:421591/140‑1 (MQ=255)
cctaccTGATTGTTGACCGTATCTTAGGCCGCCGCTTTCACGCGCCTTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGCCAAATACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 2:349269/135‑1 (MQ=255)
ccGAACTTATTGTTGACCTTAGCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTTTATGGCAACCACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 1:96943/139‑1 (MQ=255)
ccGAACTGATTGTTGACCGTATCGTCGCCCGCCGCGTGCACGCGCTGTTGGGTCGTGTTTATCAC‑TTTAATTTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 3:1323832/137‑1 (MQ=255)
actaaCTGATTTTTTAGCGTATGGTAGGCCTCCGCGTGCACGCGCCGTCTGGTGGTGTTTATCAC‑TTTAAATTCAATCCGCCTAAAGTTTAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 6:253168/137‑1 (MQ=255)
actaaCTGATTTTTGACCTTATCTTAGGCCGCCGCGTTCACGCGCCGTGTGGTGTTGTTTATCAC‑TTAAAATTCAATCCGCCGAATGTATAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 5:1246043/137‑1 (MQ=255)
aCGAACTGATTGTTGACGGTAGGGTAGGCCGCCGCGTTCTCGCGCGGTGTGGTGTGGTTAATCAG‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 4:1169814/138‑1 (MQ=255)
aCGAACTGATTGTTGACGGTAGCGTAGGCCGCCGCGTTCACGCGCCGTCTGTTGGTGTTTATCAC‑GTTAAATTCAATCCGCCTAAAGTAGACGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGAt < 6:385473/140‑1 (MQ=255)
aCGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAATTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACg < 4:1069257/138‑1 (MQ=255)
gATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCAC‑CTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGCCGGTACCCGTGTATCACTGACTAACCGTAAAGACGATCATGaaa > 1:1152550/1‑139 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTTTAAC‑GGTAAATTAAATGCGCCGAAATTAGAAGGCAAAGACGACGTTAACGGGGCAGAACAGACTACCAGGAAAGCAGATCAGGAAgaga > 7:1042416/1‑140 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATACACCGAAAGTAGAAGGCCAAGACGCCGGTACCCGTGAAGAAAATCAAACCCGGAAATACGATCAGGAagcgc > 7:830709/1‑137 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAA‑GTTAAATTAAATCCGCCGAAAAAATAAGGAAAAACCGACCTAACCTGTGAAGAAAGTACTACCACTAAAGACGATCAGTaattgc > 5:317447/1‑136 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAC‑GTTAAATTAAATCCGCCCAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAAATGAATACCCCTAAAGAAGATCAGGAAgaga > 7:1165349/1‑140 (MQ=255)
tgttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAC‑GTTAAATTAAATACGCCGAAAGTAGAATGCAAAGACGACGTTACCGGGGAAGAAGAGACTACCCGTAAAGACGATCAGGAagatc > 7:1005484/1‑138 (MQ=255)
ggttgACCGTATCGTCGGCCGCGGCGTTCACGCGCGGTCTGGTCGTGTTTTTCAC‑GTTAAATTCTATCCGCCGAAATTTGAAGGCAATGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAgaga < 7:708866/139‑1 (MQ=255)
ttttaCCGTATCGTCGGCCGCCGGGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTAAAATTCAATCCGCCGAAAGTATAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAc < 2:107693/136‑1 (MQ=255)
gttgCCCGTATCGTAGGCCGCCGCGTTCCCGCGCCGTCTGGTCGTGTTTATCAC‑TTTAAATTAAATCCGCCCAAAGTATAACCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAc < 2:502010/140‑1 (MQ=255)
ttgCCCGTATCGTCGGCCGCCGCGTTCAGGCGCGGTCGGGGCGTGTTTATCAC‑GTTAAATTCAATCCCCCGAAAGTAGAAGCCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 1:1098689/140‑1 (MQ=255)
ttgACCTTATGGTCGGCCGCCGCGTTCACGCGCGGTCTGGGCTTGTTTATCAG‑GTTAAATTCAAACCGCCGAAAGTAGAAGCCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACTATCAGGAAGAGAcc < 2:631291/140‑1 (MQ=255)
ttgACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAA‑GTTAAATTAAATCCGCCCAAAGTAGAATGCAAATACGACCTTACCCGGGAAGAACAGACAAACCCTAAAGACGCTCAGGAAgaga > 3:283061/1‑138 (MQ=255)
ttgACCGTATCGTAGGCCCCCGCGTTCACGCGCCGTCTGGGCGTGTTTATAAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 8:1263242/140‑1 (MQ=255)
gtgACCGTTCCGTAGGCCGCCGCGTTCACGAGGCGTGTGGTGGGGTTTATCCC‑GTTAATTTCATTCCGCCTAAATTAGACGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGAcc < 1:143258/139‑1 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCAGCCGAAAGTAGAAGGCAAAGAAGACGTTACCGGTGAAGAACTGACTAAACCTAAATACGATAAGGAAGAGAAcgt > 6:11699/1‑140 (MQ=255)
gACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTAGAAC‑CGTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGCCGTTAACGGTGCACAACAGACTACCCCTAAAGACGAACACGAagatcacct > 8:69166/1‑134 (MQ=255)
ccGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCCC‑GTTAAATTAAATCCGCCCAAAGTAGAAGGCAAAGACGCCGTTACCGGTGAAGAACTGACAAACCGTAAAGACGATCAGGAAGAGGCcgt > 4:1272986/1‑138 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCCCCGAAAGTAAAAGGCAAAGACGACGTTACCGGGGAAGAACAGACTACCCGTAAAGACCCTCAGGAAGAGACcctaccg > 8:552389/1‑138 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAAATAAATCAGCCGAAAATAAAACGCAAACACGAAGTTACCGGAGAACAAAAGACTCACCGATAAAACCATCAAGAAGACACcgaaaga > 6:681739/1‑135 (MQ=255)
gTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATAAC‑GGTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGGTACCGGTGAAGAACGGCCTACCCGTAAAGACGCTCAGGCAGCGCCcgtacgt > 8:334979/1‑140 (MQ=255)
tATCGTA‑GCCGCCGCGTTCACGCGCCGTCGGGTCGTGTTTATCCC‑GTTAAAATGCAACCGCCGAAACTAGAAGGCAAAGACTCCGTTACCGGTGGAGAACTGACTAACCGTAAAGACGATAAGGAAGCGACCGTACGTaa > 8:1126880/1‑140 (MQ=255)
aTCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGGTTATCAC‑GTTTAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTAACCGTAAAGACGATCAGGAAGAGACcgtacgg > 4:1026688/1‑137 (MQ=255)
gggCCGCCGCGTTCACGCGCCGTCTGGGCGGGTTTATCAC‑GTTAAATTCAATCCGCCTAAAGTAGACGGCAACGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 5:1104421/139‑1 (MQ=255)
cggCCGCCGCGTTCACGCGCCGTGTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 7:865793/139‑1 (MQ=255)
cggCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 2:473203/139‑1 (MQ=255)
cggCCGCCGCGTTCACGCGCCGGCTGGTGGTGTTAATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 8:314859/139‑1 (MQ=255)
cgcccgccgCGTTCACGCGCTGTGTGGTGGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGCAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTc < 5:70429/137‑1 (MQ=255)
aGGCCGCCGGGTGCACGCGCCGGATGGGGGTGTTTATCTC‑GTTAAATTAAATCCGCCGAAAGTATATGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACg < 4:730804/138‑1 (MQ=255)
aGGCCGCCGCTTTCACGCGCCGTCTGGTCGTGTTTATCAC‑TTTAAATTCAATCCGCCGAAAGTAGAAGCCAATCACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACg < 3:607659/138‑1 (MQ=255)
aGGCCGCCGCGTGCACGCGCCGGCTGGGCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACg < 3:419040/138‑1 (MQ=255)
cgccgcGTTCACGTGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTg < 4:1326693/138‑1 (MQ=255)
cgccgcGTTCACGCGCCGTCTGGTGGTGTTTAAAAC‑ATTAAATTAAAAACACCGAAAGTAGAAGGCAAATACGACGTTACCCGTGAAAAACAGACTAACCGTAAAGACGAACAGGAAGAGACCCTAACTAAAACTCTGGt > 6:1282275/1‑140 (MQ=255)
cgccgcGTTCACGCGCCGTCTGGTCGTGTTTATAAC‑GTTAAATTCAATACGCCGTAAGTAGGAGGCAAATGCGAAGGTTCCGGGGCAGAACAGAATACCCGTTAAGGCGATCAGGTAGAGCACGTACGTTAAAGTCTggg > 2:1232189/1‑139 (MQ=255)
cgccgcGTTCACGCGCCGTCTGGTCGTGTTTATAAC‑GGTAAATTCAATACGCCGAAAGTAGAAGGCAAAGCCGACGTTACCGGTGCAGAACTGACTACCCCTAAATACGATCAGGTAGAGACCGTTCCTAAACGTcgtgg > 2:1305472/1‑136 (MQ=255)
ccgcGTCCTCGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCCCGGAAAGTTGAAGGCAACGACGACGTTACCTGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTg < 6:558292/140‑1 (MQ=255)
cgcgTTCACGCGCCGTCTGGTCGTGTTTTTCAC‑GTTAAAATCAATACGCCGTAAGTAGAACGCAAACAGCACGTTTCCGGTGGTGCTCTGCCTTCCCGGTAAGAAGATCACGAAGAGACCGTACGTTAACGGGTGGTTGa > 8:607914/1‑140 (MQ=255)
gcgTTAACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGaa < 7:468643/140‑1 (MQ=255)
ggTTCCCGCGCCGTTTGGGCGTGTTTATCAC‑GTTAAATTCAATCCGCCTAATGTATACGGAAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 1:370567/139‑1 (MQ=255)
ggTTCAGGCGCGGTCTGGTGGTTTTTTTCAG‑GTTAATTTCAAACCGCCTAATGTAGAAGGCAACGACGACGTTACCGGGGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGa < 3:355567/137‑1 (MQ=255)
ctttCACGCGCCGTCTGGTCTTGTTTATAAC‑TTTAAATTGAATCCGCCTAAAGTAGACGTAAATCACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAAt < 8:383038/138‑1 (MQ=255)
tccccgcgCCGTTTGGTCGTGTTTATCAC‑GTTAATTTCAAGCCGCCTACAGTAGAAGGAATAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATAc < 7:321234/136‑1 (MQ=255)
gcgcCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCAt < 4:70410/138‑1 (MQ=255)
ccGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGAt < 6:868050/140‑1 (MQ=255)
ccGTCTGGGAGTGTTTATCAC‑TTTAAATTCACTCCGACTAAAGTAGACTGCAAAGACGTCGGTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAg < 4:547426/138‑1 (MQ=255)
cGTCTGGTCGTGTTTTTGAC‑GTTAAATTGAATCCGCCGCAAGTTGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCCTAAAGACGATCAGGAAGAGCCCGTACGTAAACGTCTGGGTGAATACCATCAGATg > 1:693148/1‑140 (MQ=255)
tCTGGTCGTGTTTATCAC‑GTTAAATTGCATCCGCCGAAAGTAGAAGGCAAAGCCGCCGTTTCCGGTGAAGAACTGACTACCCGTAAAGACGCTCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGAc > 6:929559/1‑140 (MQ=255)
tGGTCGGGTTTATCAG‑TTAAAATTCACTCCGCCTAAATCACATCCCAACCACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTg < 7:740176/140‑1 (MQ=255)
tggtTTATCCA‑GTTAAATTAAATCCGCCGAAAGTAGCAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCg < 8:183147/138‑1 (MQ=255)
gtgtTTATCAC‑GTTTAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGCAGTGACCGGTGAACAACTGACTACCCGTTAAGACGATCAGGTAGAGACCGTACGTATAAGTCTGGTTGAAGAACATGAGCTGAATGCCCCg > 8:1140021/1‑140 (MQ=255)
gtgtTTAACAG‑GTTAAATTCATTCCGCCGAATCTAGATGTAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCAc < 3:243619/138‑1 (MQ=255)
tgtTTATAAC‑GTTAAATTAAAACCCCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACAACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTTAATACCATAAGATGACTGCACCGc > 8:491948/1‑140 (MQ=255)
tggttATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACCTTACCGGTGAAGAACAGACAACCCGTTAAGACGAACAGGAAGAGCCCGTACGTAAACGTCTGGGTGAATAACATAAGATGACTGCACCGc > 2:658374/4‑140 (MQ=255)
tttATCAC‑GTTAAATTAAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCa > 5:664532/1‑124 (MQ=255)
ttATCAC‑GTTAAATTCAATCCGCCTAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 6:543807/140‑1 (MQ=255)
tATCAC‑GTTAAAATAAATACGCCGAAAGTAGAATGCGAAGACGACCTTACCGGTGAAGAACTGACGACCCCTAAAGAAGAGAAGGAATAGACCGTACGGTAACGTATGGGTGCATACCATCAGATGACTGCACCGcgg > 4:938255/1‑136 (MQ=255)
aTCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGa < 4:964758/138‑1 (MQ=255)
aaccggTTAAATTCAATCCGCCTAACGTCTCAGGCAACGCCGACGTTACCGGTGCAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTATACGTCTGGTTGAATACCATCAGCTGACTGCACCGCTGATc < 8:736456/135‑1 (MQ=255)
cAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCgg > 5:623131/1‑140 (MQ=255)
cggTTAAATGCAATCGCCCTACAGAACACGCCAAACACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGc < 6:969647/138‑1 (MQ=255)
tttAAATTCAATCCGCCTAAAGTAGACGCAAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 7:899580/139‑1 (MQ=255)
gTTAAATTCAATCCGCCGAACGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 5:762089/140‑1 (MQ=255)
gTTAAATTCAATCCGCCGAAAGTATACGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGcta < 5:1161096/140‑1 (MQ=255)
|
CAGGCAGACGCGATGAAAGAAGCGGGCATCAATGTTGATTACGTTCTGGAATTCGACGTACCGGACGAACTGATTGTTGACCGTATCGTAGGCCGCCGCGTTCACGCGCCGTCTGGTCGTGTTTATCAC‑GTTAAATTCAATCCGCCGAAAGTAGAAGGCAAAGACGACGTTACCGGTGAAGAACTGACTACCCGTAAAGACGATCAGGAAGAGACCGTACGTAAACGTCTGGTTGAATACCATCAGATGACTGCACCGCTGATCGGCTACTA > NZ_CP022686/4056825‑4057096
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
