Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,504,258 |
G→T |
15.4% |
S232I (AGT→ATT) |
CIW80_RS07520 → |
YgcG family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,504,258 | 0 | G | T | 15.4%
| 268.3
/ 10.9
| 142 | S232I (AGT→ATT) | CIW80_RS07520 | YgcG family protein |
| Reads supporting (aligned to +/- strand): ref base G (64/52); new base T (24/2); total (88/54) |
| Fisher's exact test for biased strand distribution p-value = 2.58e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 142 total aligned reads displayed.
TTGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTT > NZ_CP022686/1504120‑1504388
|
ttGCCATCATTGTCCTCTTGCGATTTTCAAGCCGTCCAGGACCTGGAATATGGATGATATCCATGATTACACATACGTTCTGGTATTTATGCTTTCATGACGATCTAATGATTCAGCGGTTGTCGGTCGATTGTTTTTGt > 2:441347/1‑140 (MQ=255)
ttGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGCCCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGAGGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGt > 6:376689/1‑140 (MQ=255)
ttGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTAGt > 3:794870/1‑140 (MQ=255)
ttGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGt > 1:566311/1‑140 (MQ=255)
ttGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATAAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCCTTCGGCGGGTGTCGGTCGTGTGGTTTTGt > 2:233101/1‑140 (MQ=255)
aTTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCTTCATTCGGAGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATatgct > 2:740626/1‑140 (MQ=255)
aTTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTTTTTATTTTTAGCAGCAAActgct > 1:940034/1‑140 (MQ=255)
aTTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTTGTTTTTTTTCGCAGCAATcaggg > 1:419927/1‑136 (MQ=255)
ttACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTTTTTTTATCAGCAATatgaagg > 5:53695/1‑136 (MQ=255)
ttACCAGCCGTCCAGGACCAGGCAGATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCaaacagaa > 7:134337/1‑132 (MQ=255)
aCCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCa < 1:772589/140‑1 (MQ=255)
aCCAGCCGGCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTgg < 8:217845/138‑1 (MQ=255)
cGTCCAGGACCTTGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGGTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGt‑ct < 2:893496/140‑1 (MQ=255)
cGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGt < 7:437622/138‑1 (MQ=255)
cAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTCGCAGCAATCTGGAGGCAGGGT‑CACg > 7:646381/1‑138 (MQ=255)
ggtacTGGCATAAGGAAGATATCAATTATTACACCTACGGTCAGGTTTTTCGGCTTTCATGCCGATGTCATCATTCGGCGGGTGGCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCagt < 3:127251/136‑1 (MQ=255)
ggACCTGGCATATGGCTGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCagt < 1:455222/140‑1 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCagt < 5:253672/140‑1 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCagt < 1:205864/140‑1 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCagt < 3:396912/140‑1 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTAATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCagt < 2:700958/140‑1 (MQ=255)
ccTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTTTTTTATTTTATTTTTAGCAGCAATCTGCTGGCAGCGT‑CGCGCcgtatg > 1:408824/1‑138 (MQ=255)
cTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGtt > 1:621907/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGCCGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTATTTTATTTTTCGCAGCAATATGCTGGCAGCGG‑GTCGCCGTAGtttt > 1:502161/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTAGTTTATTTTTAGCAGCAATATGCTGGCAGCGT‑CTCGCAGTAGtttt > 3:144223/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTGTTTATTTTTCGCAGCAATATGCTGGCAGCGT‑CTAGCAGTAGtttt > 3:455516/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTGTTTATTTTTAGCAGCAATCAGCTGGCAGCGT‑CTCGCAGTAGtttt > 1:418098/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTGTTTATTTTTAGCAGCAATATGATGGCAGCGT‑CTCGCAGTAGtttt > 1:106545/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTAGCATCAAATGTCTGGCACCGT‑ATCCCAGTAGtttt > 5:768633/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGtttt > 4:845031/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGGCGTTTGGTTTAGTTTATTTTTAGCAGCAATATGCTGGACGCGT‑CTCGCAGTAGattt > 3:332967/1‑140 (MQ=255)
gCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTTGTTTATTTTTCCCAGCAAAAAGCGGGCCGCGG‑CTCGCACTAGttttt > 4:622078/1‑140 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTCGCATCAATCTGCTGGCAGCGT‑ATCGCAGTtttttt > 8:19578/1‑138 (MQ=255)
tatGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCAATCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTATCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAat < 1:781687/140‑1 (MQ=255)
tGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATGTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAatat > 6:583960/1‑140 (MQ=255)
tGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAatat > 4:537357/1‑140 (MQ=255)
tGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAatat > 6:236817/1‑140 (MQ=255)
tGGATGATATCAATGATTACACCTACGGTCTGGTTTTGCTGCTTTCAGGACGAGGTCATCATTCGGCGGGTGTCGGTCGTGGGGTTTAGTTTTTTTTTCGCAGCAATCTGCTGGCAGCGT‑CGGGCAGGAGTTTTTAatat > 4:227096/1‑140 (MQ=255)
ggATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAACAATCTGCTGG‑AACGTGCGCGCAGTACGTATTAatatt > 1:117787/1‑139 (MQ=255)
ggATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTTTTTATTTTTATCCGCAAAATGCTGGCAGCGG‑CTCGCAGTAGTTTTTAata > 8:484007/1‑138 (MQ=255)
gatgatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTTTTTTTAGCAGCAAAATGCTTGCCGCGT‑CTAGCAGTAGTTTTTAatat > 7:183853/1‑138 (MQ=255)
gatgatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CGCGCAGTAGTTTTTAatat > 7:871728/1‑138 (MQ=255)
atgatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATAtgtg < 5:260812/140‑1 (MQ=255)
tgatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGc < 2:325225/140‑1 (MQ=255)
gatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGcc > 2:181243/1‑140 (MQ=255)
gatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATATGGGGGCAGCGG‑CTCGCAGGTGTTTTTTATAtttggc > 5:196225/1‑138 (MQ=255)
gatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAAAATGCAGGCACCGT‑CACGCACTACTTTTTAATAtttggc > 1:855526/1‑138 (MQ=255)
atatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTGTTTATTTTTCGCCGCAATCTTCTGGCCGCGT‑CTCGCAGTAGTTTTTAATATGTGGcg > 5:440292/1‑140 (MQ=255)
atatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCATCGT‑CTCGCAGTATTTTTTAATATGTGCcg > 4:501135/1‑140 (MQ=255)
atatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGGTTTAGGTTATTTTTCGCAGCAATATGCTGGCAGCGT‑CTCGCAGGAGTTTTTAATATGTGCcg > 6:638554/1‑140 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTGGTTTTATGTTATTTTTCGCACCAAAGTGCTGGCAGCGT‑CTAGCAGTTGTTGTTTAAAtgtgac > 7:699818/1‑136 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGGAGGTTTTAatattttgc > 8:693490/1‑133 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCcg < 8:66574/138‑1 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTGGTTTTTGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CGCGCAGTAGTTTTTTATATGTGCcgcg > 1:210392/1‑140 (MQ=255)
cAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTa < 3:124632/140‑1 (MQ=255)
aaTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTAt < 3:59337/140‑1 (MQ=255)
attaTTACACCTACGGTCAGGTTTTTCTGCGTTCAGGACGATGTGATCCTTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 2:24591/137‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 2:621907/140‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 5:622796/140‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 3:334013/140‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTGTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGG‑CTCGCAGTAGTTTTTAATATGTGCCGCGTAtt > 5:426965/1‑140 (MQ=255)
aTGATTACACCTACGCTCTGGTTTTTCTGCATTCAGGACGATGTCATCATTCGGCGGTTGTCGGTCGTTTGGTTTAGATTATTTATATCAGCAATCTCCAGGCCGACT‑CACGCACTAGATTTTAAAATGTGGCGCGTAtt > 6:73865/1‑140 (MQ=255)
tGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTAGCCGCAATCATCTGGCAGCGT‑CACGCAGTAGTTTTTAATATTTGCcgcggtt > 7:329628/1‑135 (MQ=255)
tGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGACGTGTTTTTTTGTTTTTTTTTCGCAGCAAACAGCGTGGAGGCT‑GTCGCAGTATGTTTTAATATGTGCCGCGGAttt > 1:761702/1‑140 (MQ=255)
gATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTAtt > 8:504086/1‑138 (MQ=255)
tACACCTACTGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTAGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCTGTAGTTTTTAATATGTGCCGCGTATTTCCtt < 5:647197/140‑2 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTAGACCCAATCTGAGGGCATCCG‑GACCCAGTAGGTTTTAATATTTGACGCGTATTTccga > 5:689312/1‑138 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTcc < 7:560978/138‑1 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTa > 3:279527/1‑140 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTa < 6:424207/140‑1 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCGGGCAGCGT‑GGCGCAGTAGGTTTTAATATTTGCCGCGTATTTccga > 7:530762/1‑136 (MQ=255)
aCGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCAGCTGGCAGCGT‑CTCGGAGTAGGTTTTAATTTTTTCCGCGTATTTCCTATGATGCt > 3:356715/1‑140 (MQ=255)
aCGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTGTTTATTTTTGGCAGCAATCTTCTGGCAGCGT‑CTCGCAGTATTTTTTTATATTTGGCGCGGATTTACTATGATGcg > 3:308976/1‑139 (MQ=255)
aCGGTCCGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTTTTTTTTTTTAGCCGCAATATGGTGGCCGCGT‑CTGGCACGAGTTTTTAATTTGTGCCGCGGAATTACAatgatggt > 3:743758/1‑138 (MQ=255)
cGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CACGCAGTAGTTTTTAATATGTTCCGCGTATTTCCTATGATGCTg > 3:898435/1‑140 (MQ=255)
cGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATTTGCCGCGTATTTACTATTATTCTg > 3:675176/1‑140 (MQ=255)
cGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAATCAGCTGGCAGCGG‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTg > 6:392265/1‑140 (MQ=255)
ggTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTGTGTATTTTTCGCAGCAATCTGGTGGCAGCGG‑GTCGGAGTAGTTTTTAATATGTGGCGCGTATTTCCTATGATGcg > 8:720834/1‑137 (MQ=255)
ggTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CACGCAGTAGTTTTTTATATTTTCCGCGGATTTACTATTTTGCt > 7:424871/1‑138 (MQ=255)
tGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTTTTTTTCGCAGCAAAATTGTGGGCTCGT‑GTCGCAGTATTTTTTAATATTTGGCGCGTTTTTGCTATGATGCTGGcccc > 3:619168/1‑140 (MQ=255)
tGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCAGGCAGCGT‑CTAGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATTATGATGGcccc > 4:118985/1‑140 (MQ=255)
tGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTATTTTTTTTTTAGCAGCCATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGGGGGGGTTTTGCTATGTTGGTGGcccc > 5:513820/1‑140 (MQ=255)
tGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTATTTTATTTTTCGCAGCCATATGCTGGCCGCGT‑GGCGCATTAGTTTTTAAAATTTGCCGCGTATTTACGATGATTGTGGcccc > 5:201655/1‑140 (MQ=255)
ggTTTTTCTGCATTCAGGACGCTGGCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGG‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGccc < 8:107082/138‑1 (MQ=255)
gTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATGTTATTTTTCGCAGCAATCTTCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTTCCGCGTATTTCATATGATGCTGGcccc > 7:734655/1‑138 (MQ=255)
gTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCCT‑GTCGCAGTATTTTTTTAAATGTTCCGCGTAATTCCTATTATTCTGGCCCCaa > 2:293013/1‑140 (MQ=255)
tGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATaa < 4:580995/140‑1 (MQ=255)
tGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATaa < 1:128928/140‑1 (MQ=255)
tGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAAACTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGGATTTACTATGATGCTGGGCCCCAAAAAAAAAAAAGCTAAAGTgt > 5:306646/1‑139 (MQ=255)
tGTCATCATTCGGCGGGTGTCGGTCGTGTGGTTTAGGTAATTTTTCGCAGCAATCTGCAGGCATCGT‑CTCGCAGATGTTTTTAATATGTGCCTCGTATTTGCTATTATGCTGGGCCCAAAAAATAAAAAAGGTAAtgtgt > 4:912771/1‑139 (MQ=255)
gTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTCGCATCAATCTGCTGGCAGCGT‑CTCGAAGTAGTTTTTAATATGTTCAGCGTATTTACTATGATGCGGGCCCCAAAAAATAAAAACGCTAAAGTGaa > 2:552289/1‑140 (MQ=255)
gTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaa < 2:961153/140‑1 (MQ=255)
tcatTGGGGGGTTGTCGGTGGTTTGTTTTATTTTATTTTTCGAAGATATCTGCTGGCAGCTT‑CTCGCAGTAGTTTTTAATATGTGCGGCGTTTTTCCTTTGATGCTGTCCCCAAAAAATAAAAACGCTAAAGTGaaaaaa < 4:89173/140‑1 (MQ=255)
tcatTCGGTGTGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGAAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGTCCCCAAAAAATAAAAACGCTAAAGTGaaaaaa < 2:625056/140‑1 (MQ=255)
tcatTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaaaaaa < 4:519994/140‑1 (MQ=255)
tcatTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaaaa < 8:407801/138‑1 (MQ=255)
gcggGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTTCTGGCAACGT‑ATCGCACTAGTTTTTAATATGTGCCGCGTGTTTACTATGATGCTTGCACCAAAAAATAAAAACGAAAAAGTGAAAAAACaaaa > 8:78874/1‑138 (MQ=255)
ggTGTGTGTCGTTTGTTTTATTTTATTTTTCGCTCAAATCTGATGGCAGCGT‑CTCGCAGTTTTTTTTAATATTTGCCGGTTTTTTCCTATGATGCTGGCCAAAAAAAATAAAAACGATAATGTGAAAAAACAAAagaaga < 2:422007/140‑1 (MQ=255)
gtgtttgtttTAGTTTATTTTTCGAAGCAATCTTCTGGCCGCGT‑CTCGAATTATTTTTTATTTTGTGCCTCGTATTTCATATGTTTCTGTCCACAAAAAATAAAAACGCTAAAGTTAAAAAAAAAAAGAAGACTCCGCaa < 4:234259/138‑1 (MQ=255)
tttgtttTAGTTTATTTTTCGCAGCAATATGCTGGCCGCCT‑ATAGGACTAGTTTTTAATATTTGCAGCGAATTTCATATGATGCTGGCCCCCAAAAATAAAAACCGATCAGTTCAAAAACAACACAAGACGCCACAAatt > 6:565642/1‑140 (MQ=255)
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TTGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGT‑CTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTT > NZ_CP022686/1504120‑1504388
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
