Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,504,258 |
G→T |
10.2% |
S232I (AGT→ATT) |
CIW80_RS07520 → |
YgcG family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,504,258 | 0 | G | T | 10.2%
| 336.0
/ 4.2
| 165 | S232I (AGT→ATT) | CIW80_RS07520 | YgcG family protein |
| Reads supporting (aligned to +/- strand): ref base G (89/52); new base T (21/2); total (111/54) |
| Fisher's exact test for biased strand distribution p-value = 7.58e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 166 total aligned reads displayed.
TTGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTTCGTGAATCA > NZ_CP022686/1504120‑1504397
|
gCCATCATTGTCCTCTGGCGATTTACCAGCCGACCAGGACCTGGCATATGGAGCAAATCAATGATAACACCTACGGTCTGGTGAAACTGGTTTCAGGCCGATGTCATCTTTCGGCGGGTGTCGGTCGTGTGTTTTTGttt > 1:910638/1‑140 (MQ=255)
ccATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTTTTTTAGtttt > 1:725402/1‑139 (MQ=255)
catTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCGACGGTCTCGTTTTTCTGGTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTGTTTAtt > 3:1115931/1‑138 (MQ=255)
tGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAAt > 8:759300/1‑140 (MQ=255)
tGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAAt < 5:1046034/140‑1 (MQ=255)
tGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCAGCATTCGGCGGGTGTCGGTCGTTTGGTTTTTTGTTTTTTTCGCAGCAAt > 1:125759/1‑140 (MQ=255)
tGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGGCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTAGCAGCAAt > 6:482309/1‑140 (MQ=255)
tGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATAAATGATTACACCTACGGTCTGGGTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTATTTTATTTTTTGCAGCAAt > 5:1275559/1‑140 (MQ=255)
gCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAAt > 4:1142206/1‑138 (MQ=255)
gATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGCTCGATTGATTTAGTTTATTTTTAGCAGCTATct > 4:1231858/1‑138 (MQ=255)
aCCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCa < 5:1195425/140‑1 (MQ=255)
aGCCGTCCAGGACCTGGCATATGGATGATCTCAATGATTACACCTACGGTCTGGTGTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCg < 5:666630/140‑1 (MQ=255)
aGCCGTCCACGACCTGGCATATGGATGATATCAATGATAACACCTACGGTCTGGTTTTTATCCTATCAGCACCATGACATCATACGCCCGGAGTCGTACGAGTGTTTTATTTTATTATTCGCACCAAACAGCAGGCAGCg > 6:444762/1‑140 (MQ=255)
cGTCCAGGACCTGGCATATGGATGAGCTGACTGCTTACACCTACGGTCTGGTGTTTCAGCTTTAAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTAGTTTTCGCAGCAATCTGCTGGCAGCGtct < 6:725871/140‑1 (MQ=255)
gTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTATTTTATTTTTAGCAGCAATAAGCAGGCAGCGtctc > 5:780230/1‑140 (MQ=255)
gTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTTCTGGCAGCGtctc > 7:416830/1‑140 (MQ=255)
ccAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTGTTTATTTTTCGCAGCAATCTGCGGGCAGCGgctg > 3:901839/1‑137 (MQ=255)
cAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTGCGGGCAGCGGCTCGCa > 2:508795/1‑140 (MQ=255)
aGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGc < 3:1142206/138‑1 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCagt < 7:278832/140‑1 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCa < 4:173288/138‑1 (MQ=255)
ccTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTTCGGGCAGCGTCTCGCactagg > 5:85916/1‑139 (MQ=255)
ccTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCagta < 4:1110107/138‑1 (MQ=255)
ccTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCagta < 4:770918/138‑1 (MQ=255)
ccTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATATGCTGGCAGCGTCTCGCagtatt > 2:1005663/1‑138 (MQ=255)
tGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTCGGAGCAATCTGCTGGCAGCGTCTCGCAGTAGgtt > 7:1012053/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCATGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGtttt > 2:1229511/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTAGCAGCAATCTGCTGGCACCGGCTCGCAGTAGtttt > 1:636336/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTAGCACAAAACTGCTGGCAGCGTCAAGCAATAGtttt > 1:607027/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCACCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGtttt > 8:520927/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCAGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGGGTCGGTCGTGTGTTTTAGTTTATTTTTATCAGCAATCTGCTGGCAGCGTCTCGGAGTAGtttt > 2:1102392/1‑140 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGtttt > 3:512293/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTGTTAGTTTATTTTTCTCAGCAATATGATGGCAGCCTCTCGCAGGAGtttt > 4:1294458/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGGTTTAGTTTTTTTTTAGCACCAAAAAGCTGGCAGCGGCTCGCAGTAGtttt > 3:227750/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTAGCAGCAATCTGCTTGCAGCGTCTAGCACTAGtttt > 3:344254/1‑138 (MQ=255)
tGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGAAGTCATCATTCGGCGGGTGTCGGTCGTTGTTTTTAGTTTTATTTTCGCAGCCATATGCTGGCCGCGGGGCGCAGTTTGTTTTAatat > 1:1084718/1‑140 (MQ=255)
ggATGATATCAATGATTACACCTACGGTCTGGTTTTTCTTCTTTCAGTACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCCCAGCAAACAGAATGCAGAGGCTCCCAGTATTTTTTAataat > 8:870659/1‑138 (MQ=255)
gatgatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCGTGCAGCGTCTCGCAGTAGTTTTTAatat > 3:1110475/1‑138 (MQ=255)
gatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCaa < 1:441755/101‑1 (MQ=255)
atatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTTCTGGCAGCGTCTCGCAGTAGTTTTTAATTTGTGCcg > 8:1088580/1‑140 (MQ=255)
atatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGc < 4:1199400/138‑1 (MQ=255)
atatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAAACTGCTGGCAGCCGCACGCAGTAGTTTTTTATATGTGCcg > 6:98861/1‑140 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCcgc < 6:849215/140‑1 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCcgc < 1:1003662/140‑1 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTTTTTTATTTTTAGCAGCACTATGGTGTGGGCGGGTGGGAGTAGTTTTTTATATGTGAcggg > 7:644916/1‑138 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTTTTTAGTTTATTTTTAGCAGCAAACTGGTGGCAGCGGGGCGGAGTAGTTTTTTATTTGTGGcg > 3:907298/1‑138 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTGTTTTTTTTTCGCAGCAATCTGCTGGCCGCGTCGCGCAGTAGTTTTTTATATTTGCcggg > 1:1169526/1‑138 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTGTTTATTTTTAGCAGCAATATGCTTGCAGCGTCTCGCAGTAATTTTTAATTtgtggag > 3:1348936/1‑135 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGGCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCcgcg < 6:974223/140‑1 (MQ=255)
atCAATGAATACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGCTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCcgcg < 8:382521/140‑1 (MQ=255)
tCAATGATTACACCTTCGGTCTGGTTTTTCTGCTTTCAGGAAGATGTCATCATTCGGCGGGTGTCTGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTTGCAGCGTATAGCAGTAGTTTTTAATATGTGCCGCGt < 7:1226365/140‑1 (MQ=255)
tCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCcgc < 4:283872/138‑1 (MQ=255)
tCAATGATTACACCTACGGTCTGGTTTTGCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGGCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGt < 2:1056065/140‑1 (MQ=255)
aaTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTAt < 6:1020714/140‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTa < 4:947279/138‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 2:496806/140‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 5:194818/140‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGGCTCGCCGTAGTTTTTAATATGTGCCGCGtttt > 2:1120161/1‑140 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAAAGTGCTGGCAGCGTCTCGCGGTAGTTTTTATTATGTGCGGCGttgt > 5:342591/1‑137 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGGGTCGGTAGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 5:672056/140‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTGCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTAtt < 2:791783/140‑1 (MQ=255)
tGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGGTTTTGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCACTAGTTTTTTATATGTTCcgcggtttt > 7:359567/1‑135 (MQ=255)
tGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTTGTTTATTTTTAGCAGCACTCTGCTGGCAGCGGGGCGGAGTTGTTTTTAATTTGTGGGGCGTAttt > 7:137821/1‑140 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATTTGCCGCGGATTTACTa > 1:454071/1‑140 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTGTAGTTTATTTTTAGCAGCAATCTGCTGGCCGCGGCGCGCAGGAGTTTTGAATATGTGCCGCGTATTTCATa > 7:301189/1‑140 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGATTTCAGGACGATGTCAACATTCGGCGGGTGTCGGTCGTTTGTTTTTTTTTATTTTTAGCAGCAATCTGCTGGCAGCGTGTCGCAGTAGTGTTTTATATGTGCCGCGTATTTGCtt > 6:610163/1‑139 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTTTTTTATTTTTAGCAGCAATCTGCTGGCCCCGTATCGCAGTAGTTTTTAATATGTTCCGCGTATTTACTa > 3:410271/1‑138 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAg < 3:1202728/98‑1 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGGCGGGTGTTTTAGTGTATTTTTCTCACCAATCTGCTTGCAGCGTCTAGCAGTAGGTTTTAATATTTGCCGCGGAtttaata > 3:554719/1‑134 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCAACATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCAGCTGTCATCGTCGCGCAGTAGTGTTTTATATGTTCAGCGTTTTTACTaat > 5:646321/1‑138 (MQ=255)
aCGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGCGTCGGTAGGTTGTTTTAGGTTATTTTTAGCAGCAATCTGCTGGCAGCCTCTCGCATTAGTTTTTAATATTTTCCTCGTATTTACTATTATTCt > 6:245370/1‑140 (MQ=255)
cGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGTCAGCGGCTCCCAGGAGTTTTTAATATGTGCCGCGTATTTCCTATGATGGTg > 2:517132/1‑140 (MQ=255)
cGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTAGCCGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGGTTTTCCTATTATGCTg > 8:251720/1‑140 (MQ=255)
gTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATATGCTTGCAGCGTCTCGCAGTAGTTTTTTATATTTGGCGCGGATTTGCTATTCTGCtt > 3:1203193/1‑137 (MQ=255)
tGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTTGTTTAGTTTATTTTTAGCAGCAATATGCTGGCAGCGTCTCGCAGTAGTTTTTTATATGTGCCGCGTATTTGCATTGATGCGTGcccc > 1:869437/1‑140 (MQ=255)
tGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTATTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGcccc > 8:985540/1‑140 (MQ=255)
gTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTATTTTATTTTTCGCAGCAATATGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTACTATGATGCAGGCCCCaa > 1:958017/1‑140 (MQ=255)
ttttCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTa < 3:1022076/116‑1 (MQ=255)
ttttCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTa > 4:1022076/1‑116 (MQ=255)
tCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATAAGTGCCGCGTATTTCCTATGCTGCTTGCCCCCAAAAAt > 8:248357/1‑140 (MQ=255)
tttCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAATCTTCTGGCAGCGTCTCGCAGTATGTTTTAATATGTGACGCGTATTTCCAATGATGCAGGCCCCAAAAAATaaaaa > 2:34940/1‑140 (MQ=255)
gATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGAAGCGTCTCGCAGTTTTTTTTAATATTTGCCGCGTATTTACTATGATGCGGGGCCCAAAAAATAAAAACGCAAAAGt > 6:500294/1‑140 (MQ=255)
gTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaa < 2:3197/140‑1 (MQ=255)
catcatTCGGCGGGTGTCTGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaa < 3:774989/138‑1 (MQ=255)
catcatTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaaaa < 2:197284/140‑1 (MQ=255)
catcatTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaa < 4:554719/138‑1 (MQ=255)
catcatTCGGCGGGTGTCGGTAGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaaaa < 6:689696/140‑1 (MQ=255)
tcatTCGGCTGGTGTCGGTATTTTGTTTTAGTTTATTTTTCGCTGCATTCTGCTGGCTGCGTCTCGCAGTAGTTTTTAATATGTGCCGGGTATTTAATATGATGCTGGACCAAAAAAATAAAAACGCTAAAGTGaaaaac < 8:849641/140‑2 (MQ=255)
tcatTCGGCGGGTGTCGGTCGTTTTTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTAGCATTAGTTTTTTATATTTGCCGCGGATTTGCAATTATGAAGGCCCCAAAAAATAAAAAAGATAAAGTTaaaaaa > 7:628340/1‑140 (MQ=255)
tcatTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaaaaaa < 2:1048738/140‑1 (MQ=255)
tcatTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaaaaaa < 5:426851/140‑1 (MQ=255)
tcatTCGGCGGGTGTCGGTCGTTTGTTTTAGTGTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCTCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaaaaaa < 1:20525/140‑1 (MQ=255)
cggcggGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCATTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGGGAAAAAACaaaa > 8:1021511/1‑140 (MQ=255)
gcggGTGTCGGTCGTGTGTTTTAGTTTATTTTTCGCAGCAATCAGCTGGCATCGGCTCGCAGTATTTTTTAATATGTGCCGCGGATTTACAATTATGCTTGCCCCAAAAAATAAAACCGCAAAAGTGAAAAAACAAaaga > 8:499324/1‑140 (MQ=255)
gggTGTCGGTCGTTTGTTTTAGTTTATTTTTAGCAGCAAACTGCTGGCAGCGTCTCGCAGTAGTTTTTTATATTTGCCGCGTATTTCCGAAGATGCTGGCCCCAAAAAATAAAAACCCTAAAGTGAAAAAACaaaaca > 4:721436/1‑136 (MQ=255)
tgtCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTATAGCAGTAGTTTTTAATATGTGCCGGGTATTTACTATGAAGCTTGCCCCAAAAAATAAAAACGCAAAATTGAAAAAACAAAATAacaca > 2:874798/1‑139 (MQ=255)
ggtcgTTTGTTTTAGTTTATTTTTCGCAGCAATATGCAGGCAGCGTCTCGCATTAGTTTTTAATATGTGCCGCGTATTTCCAATGAAGCTGGCCACAAAAAATAAAAAAGCAAAAGTGAAAAAACAAAAAAAGACTACGc > 8:1155387/1‑140 (MQ=255)
tttgtttTAGTTTATTTTTAGCAGCAAAAAGCTGGCACCCTCGCGCAGTAGTTTTTAATATTTTCCGCGGATTTCCTATGATTCTGGCCCCAAAAAAAAAAAACACTAAATTTAAAAAACAAAAGAAGACTCCACAAatt > 8:126497/1‑140 (MQ=255)
tAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCTGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTTCGTGAAt < 2:622655/140‑1 (MQ=255)
gTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCAAAGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTACGTTAATCa > 6:174688/1‑140 (MQ=255)
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TTGCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTTTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAGTTTTTAATATGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTTCGTGAATCA > NZ_CP022686/1504120‑1504397
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
