Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,504,258 |
G→T |
12.8% |
S232I (AGT→ATT) |
CIW80_RS07520 → |
YgcG family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,504,258 | 0 | G | T | 12.8%
| 259.6
/ 2.8
| 134 | S232I (AGT→ATT) | CIW80_RS07520 | YgcG family protein |
| Reads supporting (aligned to +/- strand): ref base G (66/45); new base T (18/4); total (85/49) |
| Fisher's exact test for biased strand distribution p-value = 5.48e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 136 total aligned reads displayed.
GCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTTCGT > NZ_CP022686/1504122‑1504391
|
tGTCCTCTGGCGATTTACCAGCCGTAAATGAAATTGAAAATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTTTTTTAGTTTAttttt > 6:518353/1‑138 (MQ=255)
ctctGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCgcagc < 7:530123/140‑1 (MQ=255)
tctGTCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACATAAAGTCTGTTTTTTCTGCTTTCAGGAAGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGTTTTAGATTAATTTTCgcag > 2:995415/1‑138 (MQ=255)
tctGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGCTTACACCTAAGGACTGGTTTTTATGCTTTCATGACGCAGTCATCATACGGAGGGTTACGGTCGT‑GTCTTTTAGTTTATTTTTCgcag > 6:729027/1‑138 (MQ=255)
tctGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCgcag > 6:709321/1‑138 (MQ=255)
tGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATAAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGGCGT‑GTGTTTTTTGTTATTTTTAGCAGCAAt > 8:146554/1‑140 (MQ=255)
gCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAAt > 5:760897/1‑138 (MQ=255)
gCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAAt > 1:708420/1‑138 (MQ=255)
gCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATAACACCTACGGTCTGGTGTTTCTGCTTTCATGCCGCTGGCAGCATTCGGCGGGTGTCGTTCGT‑GTGTTGTAGTTTATGTTTAGCAGCCAt > 4:879176/1‑138 (MQ=255)
gATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCTGCGGGTGTCGGTCGA‑TTTTTTTATTTTTTTTTTATCAGCAAtat > 1:312837/1‑136 (MQ=255)
aTTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATctg < 2:253824/138‑1 (MQ=255)
aTTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTGTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCATCAATctgcg > 8:556126/1‑139 (MQ=255)
ttACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATctgct < 6:311427/138‑1 (MQ=255)
ccAGCCGTCCAGGACCTGGCATATGTATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAg < 8:414692/140‑1 (MQ=255)
cGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCTGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGt < 2:433003/138‑1 (MQ=255)
cGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGt < 3:583786/138‑1 (MQ=255)
aGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGc < 3:98863/138‑1 (MQ=255)
aGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCAATCGGCGGGGGTCGGTCGT‑GTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGc > 3:495102/1‑138 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCagt < 8:829147/140‑1 (MQ=255)
ggACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCa < 1:700169/138‑1 (MQ=255)
ggACCTGGCATATGGAGGAGATCAAGGATTAGCCCGACGGTCTGGTGTGTCTGCTTTCAGGCCGATGTCATCATGCGGCGGGTGTCGGTCGT‑GTGGTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCGCGCa < 4:589364/138‑1 (MQ=255)
tGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCagtag‑t < 5:470511/138‑1 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGGCTCGCAGTAG‑tttt > 8:311972/1‑140 (MQ=255)
ggCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGTTTTAGTTTATTTTTCGCAGCAATATGCTGGCAGCGTCTCGCAGTAG‑tttt > 7:553913/1‑140 (MQ=255)
gCATATGGATGATATCAATGATTACTCCTAAGGTCTTGTTTTTCTGCTTTCATGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTATTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑ttt < 4:274964/138‑1 (MQ=255)
gCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑ttt < 2:650712/138‑1 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGTCGGGTGTCGGTCGT‑TTGGTGTAGTTTATTTTTCGCAGGAATCTGCTGGCAGCGGCGCGCAGAAG‑tttt > 4:222759/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAATATGCTGGCAGCGTCTCGGAGTAG‑tttt > 5:562420/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAAACTGCTGGCAGCGTCTCGCAGTAT‑tttt > 5:698034/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGGTTTATTTTTTTTTTCGCAGCAAAATTCTGGCAGACTCTCGCACTAG‑tttt > 5:270767/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCAGCTTTCAGGACGATGTCATCATTGGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGGAGCAATCTGCTGGCAGCGGCGCGCAGTAG‑tttt > 2:485383/1‑138 (MQ=255)
cATATGGATGATATCAATGATTACACCTACGGTCTGGTGTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGTTGTCGGTCGT‑TTTTTTTATTATATTTTTATCAGCAATCTGATGGCAACGGCTCGCAGTAG‑tttt > 6:20135/1‑138 (MQ=255)
cATATGGATGATATCAAAGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTTTTTTTCTCAGCAATCTGCTGGCACCGTATCGCAGTAT‑tttt > 3:774505/1‑138 (MQ=255)
atGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTaa < 5:649171/138‑1 (MQ=255)
ggATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAata > 4:509128/1‑138 (MQ=255)
gatgatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTTGTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAata‑t > 6:401765/1‑138 (MQ=255)
tgatATCAATGATTACACCTACGGTCTGGTTTTTCTGCGTTCAGGACGATGTCATCATTCGGCTGGTGGCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑tgt < 5:728775/138‑1 (MQ=255)
gatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTATGTTATTTTTCGCCGCAATATGCTGGCAGCGTGACGCAGTAG‑TTTTTAATA‑TGTGcc > 7:228926/1‑140 (MQ=255)
gatATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGGTTTATTTATTTTTTCGCAGCAATCTGCTGGCAGCGTCTCGAAGTAT‑GATTTAATA‑TGTGcc > 8:119172/1‑140 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGcc > 3:614079/1‑138 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTCGCAGTTG‑TTTTTAATA‑TGTGcc > 4:919986/1‑138 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGAAGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTATTTAATTTTTCCAAGCAATTTGGTGGCAGCGTAAGGAAGTAT‑TTTTTAATA‑tgttgg > 2:640572/1‑135 (MQ=255)
tatCAATGATTACACCTACGGTCTGGTTTTTCGGCGTTCAGGACGATGTCATCATTCGGCGGGTGGCGGTCGT‑TTTGTTTATGTTATTTTTAGCAGCAATATTCGGGCAGCGTCTCGCATGAT‑TTTTTAATA‑agttgc > 3:104786/1‑135 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTTTTTTTGTTTATTTTTTCCCCCAATCTGCGGGCAAGGGGTCGCATTAG‑TTTTTAata‑ttgtccg > 5:124773/1‑132 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTAGGTCGT‑TTGTTTTATTTTATTTTTCTCATCAATCAGCTGGCAGCGTCTCGCAGTAC‑TGTTTAATA‑TTTGCcg > 5:442728/1‑138 (MQ=255)
atCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGGCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCcgcg < 7:622532/140‑1 (MQ=255)
tCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGTGTTGTTTT‑GTTTTTTTTTAGCACCAAGATTCTGGACTCGGCTCGCAGTTG‑GGTTTAATA‑tgtgaggctg > 7:350/1‑134 (MQ=255)
cAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCcgcg < 3:662395/138‑1 (MQ=255)
cAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTGTTATTTTTATTTTAGCAGCAATCTTCAGGCCGGGTCTCGCAGTTG‑TTTTTTATA‑TGTGCcccg > 5:218395/1‑138 (MQ=255)
ctGATTACCCCTCCGGTCTGGTTGTTCTGCTTTCAGGACGATGTCATCATTCGGCGGTGGTCGTTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTa < 6:556219/137‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTa < 5:794565/138‑1 (MQ=255)
aTGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTa < 6:283232/138‑1 (MQ=255)
aTGATTACACCTAAGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGTGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGtttt < 7:382927/140‑1 (MQ=255)
aTGATTACACCTAAGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTAtt < 7:577167/140‑1 (MQ=255)
gATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTAGCAGTAT‑GTTTTAATA‑TTTGCCGCGTAtt > 6:277297/1‑138 (MQ=255)
aTTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTGTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGGCTCGCAGTAG‑TTTTTAATA‑TGTGGCGCGGAttt > 1:105444/1‑138 (MQ=255)
aTTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGTTTTTGTGTTTTTTTAGGCGGACTATGGGGGGCGCGGGGCGCAGTTG‑TTTTTTATA‑TGTGCCGCGGAttt > 1:594161/1‑138 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTcc < 2:7506/138‑1 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTcc < 4:610323/138‑1 (MQ=255)
tACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGGCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTcc < 5:542326/138‑1 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTATTTTATATTTAGGCGCAATCTTCAGGCATCGTCTCCCAGTAT‑GTTTTAATA‑TGTGCCGCGTATTTCCTa > 3:382993/1‑138 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TTTGCCGCGTATTTACTa > 2:760526/1‑138 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTACTa > 2:747438/1‑138 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGTTTTAGTTTTTTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTACTa > 6:826141/1‑138 (MQ=255)
cacCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTCGCAGTAT‑GTTTTTATA‑TGTGCCGCGTTTTTACTatt > 7:845923/1‑139 (MQ=255)
acCTACGGTCTGGTTTTTCTGCTTTCAGGAAGATGTCCTCATTCGGAGGGTGTCGGTCGT‑TTGTTTTATGTTTTTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCATGAT‑TTTTTAATA‑TTTGGCGCGGAtttacaaa > 5:905654/1‑133 (MQ=255)
acCTACGGTCTGGTTTTTCTGCTTTAAGGCCGATGTCATAATTCGGCGGGTGTCGGTCGT‑TTGTTTTATTTTTATTTTAGGCGCAAACAGCGGGCAGCGTGGGGCAGTAA‑TTTTTAATATTTTGCCGCGTTTTAccat > 4:1440/1‑136 (MQ=255)
cGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTCGCAGATG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTg > 8:617444/1‑140 (MQ=255)
ggTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGTTTTAGTTTATTTTTCGCCGCAATCTGGAGGGACCGTCGCGGAGTAG‑TTTTTTAAA‑TGTGGCGCGTATTTCCTATTGTGCt > 1:582852/1‑138 (MQ=255)
gTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTTGGTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGGATTTCCTAAGATTCTg > 2:626986/1‑138 (MQ=255)
gTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAATCTGCAGGCCGCGTCTCGCACTAT‑TTTTTAATA‑TGTGGCGCGTATTTCCGATGATGCTg > 6:899821/1‑138 (MQ=255)
gTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑GTGTTTTAGTTTATTTTTAGCAGCAATATGCTGGCAGCGTCTAGCAGTAG‑TTTTTAATA‑TTTGCCGCGGAGTTCATATGATGCTg > 1:441656/1‑138 (MQ=255)
gTCTGGTGTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGGTTTAGTTTATTTTTCGCAGCAATATGCTGGCAGCGGCTCGCAGTAG‑GTTTTAATA‑TGTGCGGCGGTTTTACTatgtttcgg > 6:272489/1‑132 (MQ=255)
tGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGGTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTTATA‑TGTGCCGCGTATTTACTATGATTCTGGcccc > 7:721424/1‑140 (MQ=255)
gTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCATATGATTCTGGcccc > 2:1018221/1‑138 (MQ=255)
ttttCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTATTTTATTTTTAGCAGCAATCTGCTGGCAGCGTCTCGCAGTAT‑TTTTTAATA‑TTTGCCGCGTATTTACAATGATGCTGGCCCCaa > 5:544960/1‑138 (MQ=255)
ttCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAATTTATTTTTAGAACCAAACATCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTACCGCGTTTTTAAAAATAATCTGGCCCCaaaaaa > 8:73602/1‑140 (MQ=255)
tGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTATTTTATTTTTCGCAGCAATCTGCTGGCAGCGTATCTCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAAt < 2:186827/138‑1 (MQ=255)
tGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAAt < 6:822975/138‑1 (MQ=255)
tttCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGGTTTAGTTTATTTTTGGCAGCAATCTGGTGGGAGCGGCTCGGAGTGG‑TTTTTAATA‑TGTGGCGGGGATTTGCGTTGTTGCTGGCCCCCAaaaaaaaaaa > 7:431053/1‑140 (MQ=255)
tCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTGGCAGTAT‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATTCTGGCCCCAAAAAATaaaaa > 3:565554/1‑138 (MQ=255)
taCGATGTCATCATTCGTCGTGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGTCAGAGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCt < 1:551587/137‑1 (MQ=255)
gACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCt < 4:648629/138‑1 (MQ=255)
tGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGa < 8:359086/140‑1 (MQ=255)
tcatcaTTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAATCTGCTGGGAGCGTCTCGCGGTTG‑TTTTTTATA‑TGTTGAGCGTTTTTACTATGATGATGGGCCAAAAAAAAAAACACGCGAAAGtta > 6:925052/1‑136 (MQ=255)
tcatcaTTCGGCGGGTGTCGGTCGT‑TTGTATTTGATTATTTTTCGCACCAATCTGCTGTCAGCCTCTAGCACAAT‑ATTTTAAAA‑TTTGCCGCCTTATTCCAAAAATTCAGCGCCCAAAAAATAAAAACACTAAATTGa > 4:43099/1‑138 (MQ=255)
tcatcaTTCGGCGGGTGTCGGTCGT‑GTGGTTTATTTTATTTTTAGCAGCAATCTTCAGGCAGCCTATCGCAAGAG‑TTTTTAATA‑TTTGACGCGTATTTACAATGATTAAGGCCCCCAAAAATAAAAAACCAAAAGtta > 3:238877/1‑136 (MQ=255)
catcatTCGGCGGGTGTCGGGCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGaa < 5:107104/138‑1 (MQ=255)
tcatTCGGCGGGTGTCGGTCGT‑TTGTTTTTGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TTTGCCGCGTATTTCATTTGATGCTTGCCCCAAAAAATAAAAACGCTAAAGTGaaaa < 4:774505/138‑1 (MQ=255)
ggcggGTGTCGGTCGT‑GTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCCGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGGATTTCCTATGCTGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACaaa > 4:855506/1‑138 (MQ=255)
gcggGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTAGCAGCAATATGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TTTGCCGCGTATTTACTATGATGCTGGCCCCAAAAAAAAAAAACACTAAAGTGAaaaaaaaaaa > 5:952223/1‑138 (MQ=255)
ggggTGGCGGTGGT‑TTTTTTTTGTTTTTTTTTCGCAGCAATCTGCTGGCTGCGTCTCGCTGTTG‑TTTTTAATA‑TGTGCCGCTTATTTCCTATGATGCTGGCCCAAAAAAATAAAAACGATAAAGTGAAAAAACaaacg < 5:688902/137‑3 (MQ=255)
gggTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTAGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAaaga > 4:969248/1‑138 (MQ=255)
ggTGTCGGTCTT‑TTGTTTTATTTTATTTTTCGCAGCAATCTTCTGGCAGCGTCTCTCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCATATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAaagaa < 6:842242/138‑1 (MQ=255)
ggTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATATGCTGGCAGCGTCTCGCTGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCATATTATGCTGGCCCAAAAAAATAAAAACGCTAAAGTGAAAAAACAAaagaa < 4:228312/138‑1 (MQ=255)
tcgT‑TTGTTTTAGTTTTATTTTACCCGCAATAAGCTGGCAGCCTCAAGCAGAAGTTTTTTAATA‑‑GTGGCGACGATTTGCAATGATGCTGGCCCCAAAAAATAAAAACGCTCAATAGAAAAAACAAAAGAATACtaccc > 2:963976/1‑134 (MQ=255)
tcgT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCTTATTTCCTATGATGCCGCCCCCAAAAAATAAAAACCCTAAAGTTAAAAAACAAAAGAAGACTCCGc < 1:760526/138‑1 (MQ=255)
gcgT‑TTTTTTTATTTTATTTTTCGCAGCAATATGGTGGCAGCGTCTCGCTGTTG‑TTTTTAATT‑TGTGCCGCGTATTTCCTATGATGCTGGCCCAAAAAAAAAAAAACCCTAAAGTGAAAAAACAAAAGAAGACTCCGCaa < 8:286544/139‑1 (MQ=255)
tgtttTAGTTTATTTTTCGCAGCAATCTGCGGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCATATGATGCTGGCCCCAAAAAATAAAACCGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAAttt < 4:111032/138‑1 (MQ=255)
tttAGTTTATTTTTAGCAGCAATCAGCTGGCAGCGTGACGCAGTAG‑TTTTTAATA‑TTTTCCCCGGATTTCCAATGAAGCTGGCCCCAAAAAATAAAAACGCAAAAAAGAAAAAACAAAAGAAGACTCAGCAATTTAGt > 6:550633/1‑138 (MQ=255)
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GCCATCATTGTCCTCTGGCGATTTACCAGCCGTCCAGGACCTGGCATATGGATGATATCAATGATTACACCTACGGTCTGGTTTTTCTGCTTTCAGGACGATGTCATCATTCGGCGGGTGTCGGTCGT‑TTGTTTTAGTTTATTTTTCGCAGCAATCTGCTGGCAGCGTCTCGCAGTAG‑TTTTTAATA‑TGTGCCGCGTATTTCCTATGATGCTGGCCCCAAAAAATAAAAACGCTAAAGTGAAAAAACAAAAGAAGACTCCGCAATTTCGT > NZ_CP022686/1504122‑1504391
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
