Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,265,084 |
T→G |
13.2% |
N77T (AAC→ACC) |
ytfJ ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,265,084 | 0 | T | G | 13.2%
| 245.8
/ 16.1
| 142 | N77T (AAC→ACC) | ytfJ | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base T (39/79); new base G (18/3); total (59/83) |
| Fisher's exact test for biased strand distribution p-value = 1.20e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 151 total aligned reads displayed.
AAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGC > NZ_CP022686/3264945‑3265216
|
aaGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGt > 5:473679/1‑140 (MQ=255)
aGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCTCGtt > 6:182731/1‑140 (MQ=255)
cTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGtt > 1:802509/1‑138 (MQ=255)
tttttATTACTCTCATGACTGCTGCGCTCATACATCCCTGAACCCGGAATCGCGTAGTCTTTTTTTACAATGGTGGTGGTCTGGTAACGATCGTGCGGTATGTTCGCTGATTTAATCGCTTCATTCAGCGTCGCGttttt < 5:778133/140‑1 (MQ=255)
ttttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGttttta > 6:347423/1‑139 (MQ=255)
tattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCTGCGTCGCGTTTTtct > 2:537115/1‑138 (MQ=255)
tattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTtcg > 7:530847/1‑137 (MQ=255)
tattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGGCGCGgttttat > 7:15073/1‑136 (MQ=255)
tagtaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTGAATCGCTTCAATCAGCGTCGCGgtttttg > 7:397994/4‑136 (MQ=255)
aCTCTCCAGACTGCTGCGCACCCACATCCCAGACCCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCttt < 8:432614/138‑1 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGGGGTCTGGTAACGCTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTCGCTTTTTCaga > 5:82933/1‑140 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCaga > 7:380994/1‑138 (MQ=255)
aGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGGGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGt < 6:458674/140‑1 (MQ=255)
aCTGCTGCTCACAAACATCCATGAACCCGGAATCGCGTCGTCGGTGTTAACAATGTTGGTGGTCTGGTAACGATCGTGCTGTAACTTCGATGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCAGAGGttg > 4:576753/1‑138 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAGTCGCGGCGTCGGTGTTAACAAGGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTg < 2:589191/138‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 5:477221/140‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGGCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 3:719822/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCTCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 2:174176/138‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTTGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 4:795909/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 8:312172/138‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGGGGTGGTCTGGGAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGTGGTGCg < 1:361924/138‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGGCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 5:22187/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGAGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 3:515932/140‑1 (MQ=255)
gctgcGCACAAACATCCCGGAACCCGGAATCGCGGCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 6:332680/140‑1 (MQ=255)
gcagcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTAGTCTGGTAACTAGCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 2:178034/135‑1 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTTTGGTTTGCAGAGGGGCGccc > 3:259512/1‑140 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCAGCGGTGCGccc > 4:591113/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATGTTTTTCAGAGGTGGGCCCa > 6:284149/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGACGCGTTTTTCTCTTTTGCAGACGTGCGCCCa > 4:209563/1‑140 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCTGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc < 8:342487/138‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc < 1:142492/138‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc < 1:173027/138‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 5:679910/140‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc < 8:707522/138‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 6:769841/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGGAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 7:561355/138‑1 (MQ=255)
aaaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCCTCGCGAGTTTATCATTTTCACAGGTTCGAGCAGGAataa > 6:81011/1‑139 (MQ=255)
aCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTATTTTTGAGAGGTGGGAACACCCATATGt > 3:34503/1‑140 (MQ=255)
aTCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTTTATTTTTCAGAGGTGCGCCCACCCATAAGt > 1:540128/1‑138 (MQ=255)
aTCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGGGGTCTGGTAACGATCGTGCGGTAACATCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGt < 7:725520/138‑1 (MQ=255)
tcacTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGtt < 7:133384/135‑1 (MQ=255)
tCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGc < 6:817949/140‑1 (MQ=255)
tCCATGCACCCGGAATAGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAAAGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTATTTTTCAGAGGTGCGCCCCGCAatattgttc > 4:834413/1‑135 (MQ=255)
cccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa < 5:547715/140‑1 (MQ=255)
cccTGAAACCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa < 5:396788/140‑1 (MQ=255)
ccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAg < 5:577211/140‑1 (MQ=255)
ccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTATTTTTTAAAGGGGCGACCAGCAATAtttttg > 7:700248/1‑136 (MQ=255)
gAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGGAAAGGTGGGCCCAGCCAAATGTTGGAggta > 3:865134/1‑137 (MQ=255)
aCCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCGTCAATCAGCGTCGCGTTTTTGTAGTTTGGAGAGGTTCGGCCAGGAATATTTTTGAGTAc > 2:296400/1‑138 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTTATCGCATCAATGAGCGTCGGGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGGTGTACTCGctc < 1:454469/138‑3 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc < 8:691564/138‑1 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc < 2:865411/138‑1 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGAGCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 3:591901/140‑1 (MQ=255)
tcggggcgtcgGTGGTAACAATGGGGGGGGGGTGGGAAAGATCGTGCGGGAACTTCGCGGTTTTAATCGCTTCAATCCGCGGCGGGGTTTTCTCATTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 5:762650/134‑1 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 3:2582/140‑1 (MQ=255)
cgtcgtCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGAGTCGCGGTTTTTAATTTTGCACAGGTGGGCCCAGCAATAATTTGAAGTACACGACCTTTTacc > 3:442195/1‑140 (MQ=255)
tcgtcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGGAGAGGTGCGACCAGCAATATGTTTCAGTACTCGCACTTTTccc > 2:36900/1‑138 (MQ=255)
ggTGTTAACTATGGTGGTTGTCTGGTATCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACtta < 7:47581/138‑3 (MQ=255)
ggTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGAGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACt < 3:223283/140‑1 (MQ=255)
tcacacTGGTGGGGGGCTGGTAACGCTCGTGCGGGAACTTCGCTGATTTAAGCGCTGCCAGCAGCGGCGCGGGGTGCGCTTTTGCAGAGGGGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCCCTAACGgcg < 8:185715/136‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 4:506108/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 1:278144/138‑1 (MQ=255)
tAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 2:691824/138‑1 (MQ=255)
aCAATGTTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCt < 5:375741/140‑1 (MQ=255)
aCAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCt < 6:53017/140‑1 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGACCAGCAATAAGTTGCATGAATCGCACATTTCCCACTAACGTCGCGCTGGTcc > 4:376933/1‑140 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTGCAGAGGTGCGACCAGCAATATGTTTCAGTACTCGCACTTTTACCACAACCTGCGCGCGGTTcc > 4:394873/1‑140 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTGTTTTGCATAGGTTCGACCAGCAATATGTTTCATTACTCTCACTTTTACCCAAAACAGCGCGCAGttgc > 5:440576/1‑138 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCTCTTCAATCAGCGTCGCGTTTTTCTATTTTTCAGATGTTCTACCAGCAAAATTTTGAAGTACTCGGAATTTTAACACTAACTGCGCGCTGGTCAAggg > 2:282610/1‑137 (MQ=255)
cTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTTCAGAGGTGCGACCCCCAATATGTTGCAGTAATAGCCCTTTTACCACAAACTGCGCGCTGTTCCAGGtttt > 1:7247/1‑138 (MQ=255)
tGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTAATTTGCAAAGGGGGGACCAGCAATATATTTCACTACTCGCACTTTTACCACAAACTTCGCGCTGTAGCAGGTATTGtt > 6:469052/1‑139 (MQ=255)
ggTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGt < 1:33691/138‑1 (MQ=255)
ggTAACGATCGAGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCTGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTACAGGTTTTGt < 2:494340/138‑1 (MQ=255)
gATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTATTTTTCAGAGGTGCGCCCAGCAATATGTTGCAGTAATCGCACATTTCCCACGAACAGGACGCTGTTCCAGGGTTTTTATCTaaaa > 3:628512/1‑139 (MQ=255)
ctCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCGCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACt < 4:231558/139‑1 (MQ=255)
aTCGTGCGGTATCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACt < 6:763155/140‑1 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 2:574850/138‑1 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACTAGCAATATGTTGCAGTAATCGCACTTTTCCCACTAACTGCGCGCTGTTACAGGTTTTGTAGCTAAACTGAta > 4:119342/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCGTTTTCAGAGGTGCGGCCAGCAATATGTTGGAGTACTCGCACTTTTACCACTAACTGCGCGCTGTTGCAGGGTTTGTCGCGTAACTGAtg > 6:534714/1‑139 (MQ=255)
gCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGAt < 8:55273/138‑1 (MQ=255)
cGGTAACTTCGCTTATTTAATCGCTTCAATCAGCGTCGCGTTTTTTGCTTTTGCAGAGGTGGGAACAGCAATTTGTTGAAGTACTCGCACTTTTCACACTAACTCCGCCCGCTTCCAGTTTTTGTAGCTAAACTGATc > 2:730226/1‑138 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCAGAGGTTCGTCCAGCAATATGTTTCAGGACTCGCAAGTTTCCCACTAAATGCGCGCGGGTACAGGTTTTGTAGCTAAACTGAta > 2:117264/1‑137 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCCCTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGAta > 2:550367/1‑137 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGACGTTTGCCTAGGTGGGCCCCCCACAATCTTTCAGGTCTCGCACGTGTCCCACTAACGGCGCGCTGTTGCAGGGTTTTGAGCTCGACTGAtg > 7:809190/1‑137 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCttt < 2:850049/51‑1 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCttt > 1:850049/1‑51 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGCCCAGCAATATGTTGCAGTACTCGCACGTTTACCACTAACTGCGCGCTGTTGCAGGTTTTGTAGCTTAACTGAtg > 8:76183/1‑137 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATTTTTCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTGCAGGTTTTGTAGCTAAAATGATc > 2:450227/1‑138 (MQ=255)
taCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGTCCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATc < 6:443810/139‑1 (MQ=255)
aaCTTCGCTGATTTAATCGCTTCAATCAGCGTCTAGTTTTTCTCTTTTGCAGAGGTTCGACCAGCAATATGTTGCAGTACTCTAACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTa < 1:696148/138‑1 (MQ=255)
aaCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATc < 6:440576/140‑1 (MQ=255)
aCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATATTTTGGAGAGGTGGGCCCAGCAATATTTTTGAGTTCGAGCACTTTTCCCACTAACTGCGCGCTGTTGCAGGGTTTGTTGCTAAACTGATCTTTATCa > 3:513922/1‑140 (MQ=255)
ttCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 1:485873/56‑1 (MQ=255)
ttCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg > 2:485873/1‑56 (MQ=255)
tCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTTCAGAGGTGCGACCCGCAATATTTTGAAGTACTCGCACGTTTACCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATATTTAtacatc > 3:586427/1‑135 (MQ=255)
cTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCAcc < 3:144885/140‑1 (MQ=255)
aaTCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTc < 2:118700/138‑1 (MQ=255)
gCTTCAATCAGCGTCGCGTTTTGCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTATCTGCGCGCTGTTCGAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCa < 7:432295/138‑1 (MQ=255)
cAATCAGCGTCGCGTTTTTCAATTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTACCCCAAAATGCGCGCTGGTCCCGGTGTTGTGGGTAAACTTATCTATATCCAGCACCAACTCGCCCCGag > 2:468759/1‑137 (MQ=255)
tCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACGAGCACGGTTACCCCTAACTGCGCGCGGGTGCAGGGTTTGTAGCTAAACAGATAGTTATAAAGCACCAACACGCCCCGATCGGTGATGc > 2:369297/1‑138 (MQ=255)
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AAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGC > NZ_CP022686/3264945‑3265216
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
