Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F36 I0 R1
|
107 |
8366.7 |
6299831 |
98.3% |
6192733 |
135.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,265,084 |
T→G |
23.7% |
N77T (AAC→ACC) |
ytfJ ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,265,084 | 0 | T | G | 23.7%
| 172.9
/ 22.4
| 134 | N77T (AAC→ACC) | ytfJ | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base T (43/57); new base G (32/2); total (75/59) |
| Fisher's exact test for biased strand distribution p-value = 5.38e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 141 total aligned reads displayed.
GCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAA > NZ_CP022686/3264947‑3265219
|
gCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCTCTTCAATCAGCGTCGCGt > 1:302731/1‑138 (MQ=255)
cTTTTTATTACTATCAAGACTGCTGCGCACAAACATCCATGAACACGGAATCTCGTCGTCGGTGTTAAAAATTGTGGTTGTCTGGTAACGATCGTGCTGTAACTTCGCTGATTTAATAGATTCAATAATCGTCGAGgttt > 6:400181/1‑140 (MQ=255)
tttgtATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGttt < 2:271776/138‑1 (MQ=255)
ttttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGCTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCTCTTCAATCAGCGTAGCGgttttg > 8:312446/1‑139 (MQ=255)
tttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtct > 5:492749/1‑140 (MQ=255)
ttattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGgttttg > 3:615052/1‑137 (MQ=255)
tattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCACTCAGCGTCGCGGTTTtct > 3:340430/1‑138 (MQ=255)
attaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtctc < 4:260824/138‑1 (MQ=255)
ctcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCtttttc > 3:340605/1‑136 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGACCCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTGTTTTGCaga > 8:682051/1‑140 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCaga > 5:1782/1‑140 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTATTTTGgaga > 6:470294/1‑140 (MQ=255)
aGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCGGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGt < 6:357525/140‑1 (MQ=255)
gACTGCTGCGCACAATCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCGAGTTTGGAGAgg > 3:758337/1‑138 (MQ=255)
ctgcttCGCACAAACATCCCTGAACCAGGAATAGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGTTCGTGCGGTAACTTCGCTGATTTATTCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGct < 7:499218/140‑2 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGGCGTCGGAGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGACGCGTTTTTCTCTTTTGCAGAGGTg < 1:730510/138‑1 (MQ=255)
cggctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 6:233210/138‑1 (MQ=255)
gctgcGCACAAACATCCCTGACCCCGGAAGCGCGGCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 2:517784/138‑1 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCATAGGTGCGAcc > 6:439295/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTTCAGAGGTGCGAccc > 6:398865/1‑139 (MQ=255)
gcgcACACACCTCCCTGAACCCGGACTCGCGGCGTCGGTGTTAACAATGGTGGTCGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTTCTCTTTTGCAGAGGTGCGACCAg < 7:598216/140‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATTGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTCATTTAATCGCTTCAATCAGCGTCGCGGTTTTAAGGTTTGCACAGGTgggccc > 2:197958/1‑133 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc < 2:32351/138‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGGAGAGGTGCGAcc > 2:280968/1‑138 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTACCAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTGCCGAGGTGCGACCa > 2:609897/1‑138 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCa > 4:409921/1‑138 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGAccc > 2:639403/1‑137 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTAGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTTCAGAGGTGCGGccc > 3:499008/1‑137 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAAAAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGATTCAATCAGCGTCGCTGTTTTTACTTTTGAATTGGTGCGAccc > 3:595548/1‑137 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 3:183769/138‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 7:706499/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 5:246631/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 8:35181/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGGGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 8:410823/140‑1 (MQ=255)
ccacaAACATCCCTGAACCCGGAATCTCGTCGTCGGGGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGATGATTTACTCGCTTCAATCAGCGTCGCGTTTTTCTCTTATGCAGAGGTGCGACCAg < 1:802113/137‑1 (MQ=255)
caAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCaa < 1:577264/138‑1 (MQ=255)
caAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGGGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTGAGAGGTGCGACCAGCaa > 3:350122/1‑138 (MQ=255)
aaaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAAAAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCACTTTTGCAGAGGTGCGACCAGCaaa > 4:580432/1‑137 (MQ=255)
aCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg > 2:399524/1‑127 (MQ=255)
aCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 1:399524/127‑1 (MQ=255)
aCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTGTTTTGTTTTTGAGATGTGGCACCACCAatattt > 7:416277/1‑138 (MQ=255)
tCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGAGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGtt < 3:685682/138‑1 (MQ=255)
ccccTGAACCCGGAATCGCGTCGTGTGTGGTAAGAATGGTGTTCGTAGGGTAAAGAGCGTGAGGTAACTTCGCTGATGTAATCGCTTCAATCAGCGTCGTGTTTTTCTATTTTGAAGATGTGAGACCATCAATATGtt < 4:44041/137‑1 (MQ=255)
ccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTATTTGAGAGGTGCGACCAGCCAAAAGTTGc > 1:712339/1‑138 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTTTGTTTTTGAGAGGTGCGACCCGCAATATTTTTCAGttatggc > 1:136748/1‑132 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTTCAGATGGGCGACCACCAAAATTTTTCAGTACTCGCAc > 5:245698/1‑140 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc < 4:242365/138‑1 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 5:133656/140‑1 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTTCGCATTTTCATAGGTGCGACCAGCAATATGTTGCGTTACTCGCaa > 2:356863/1‑137 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTGTTTTTGAGACGTGCGCCCAGCCATAAGTTTAAGTACTAGCAc > 1:109197/1‑138 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTTCAGATGTGCGCCCCGCCAAATTTTGCAGTACTCGCAc > 1:148466/1‑138 (MQ=255)
aaTCGCGTCGTCGGTGGTAACAATGGTGGGGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 8:106511/140‑1 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 5:651843/140‑1 (MQ=255)
tcgtcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCTCTGATTTAATCTCTTCAAACAGCGTCGCGTTTTTATCATTTGAAGATGTTCGACCCCCCAAATGTTGCAGTAAACGAACATTTcac > 1:793521/1‑136 (MQ=255)
tcgGTGTTAACAATGGTGGTGGTATGGTAACGATCGTGCGGTAACTTCGCTGATTTAATAGCTTCAAACAGCGTCGCGTTTTTATATTTTTCAGAGGTGCGAACACCAATAAGTTTCAGTACAAGCACTTATACCACTaa > 6:118380/1‑140 (MQ=255)
gtTAACAATGGGGGTGGGCTGGTAACGATCGAGCGGTAACTTCTCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGAAGAGGTTCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTg < 4:695279/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGTTCGTGCGGTAACTTCGCTGATTTAATCGCGTCAATCTGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 2:665589/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 8:663142/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 5:366935/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 5:326893/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 2:451001/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 2:91396/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 3:27595/138‑1 (MQ=255)
tAACAATGGCGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 3:409619/138‑1 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGCCCAGCAATATGTTGCAGTACTAGCACATTTCCCACTAACTGCGCGCGGTTcc > 7:560432/1‑140 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATATTTTTGAGAGGTGCCCCCCCCCATATTTTGCAGGACTAGCACTTTTACCACAAACTtcgcgcgggtaa > 7:99571/1‑134 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATATTTTGGAGAGGTTCGACCAGCAATATTTTGCAGTACTCGCACTTTTGCCCCTTACTGCGCGCtttttc > 5:692129/1‑138 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTAGCTTTTTCAGAGGTGCGCCCAGCAATATTTTGCAGTAATCGCCCGTTTACCACTAACTGCGCGCGGTTGCAg > 5:218529/1‑140 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTATTTTGGAGAGGTGCGCCCAGCAATATGTTGCAGTTATCGCACTTTTCCCACAAACTGCGCGCTggtgc > 2:410226/1‑134 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTATCGAGTTTGCAGAGGTGCGCACAGCAATATGTTGCAGTACTCGCACATTTACCCCTAACTgcgcgcatttgc > 2:267026/1‑132 (MQ=255)
gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCATCGTCGCGTTTTTGTGATTTGAAAAGGTGCGACCAGCAATAATTTGGCATAATCGCACTTTTGCCAAAAACTTCGCGCGTTTACAGGt > 5:601735/1‑140 (MQ=255)
gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATGTTTTGCAGAGGTGCGACCAGCAAAAAGTTGCAGTACTAGCACATTTCACACAAAAAGCGCGCTGTTCCATGt > 7:476161/1‑140 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTGTTTTTCAGACGGGCGACCAGCAATATGTTGCAGTACTCGCACGTTTCCCCCTAACGGCGCGCCGTTGCAggg > 2:35161/1‑137 (MQ=255)
gtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGACGTTCGACCAGCAAAATTTTGCAGTACTCGCACTTTTACCACAAAAAGCGCGCTGTTCCAGGtttt > 5:405432/1‑140 (MQ=255)
tCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTg < 5:351947/140‑1 (MQ=255)
ggTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGt < 1:434686/138‑1 (MQ=255)
gTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATGTTATTCAGAGGTGCGACCAGCAATATGTTGCATTAATCCCCCATTTAACACTAACTGCGCGCTGTTACAGCTTTTGTa > 4:790172/1‑138 (MQ=255)
cGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 8:462704/140‑1 (MQ=255)
cGATCGTGCGGTAACTTAGCTTATTTAATCGCTTCAATCAGCGTCGCTTTTTTCTCTTTTGCAGAGGTGCGACCATCAATATGTTTCAGTACTCGCACTTTTCCCACTAACTGCGCTCTGTTCCAGGTTTTGTAGCTa < 3:649354/138‑1 (MQ=255)
gATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCGCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACAGTTCCCCCAAACAGCGCGCGGGTCCAGGTTTTGTAGCTaaaa > 5:246755/1‑139 (MQ=255)
gATCGTGCGGTAACTTCGCTGATATAATCGCTTCAATCAGCGTCGCGTGTTTCTCTTTTTCAGAGTTTCGCCCAGAAATAAGTTGCAGTACTCGACCTTTTCCACATACATTCGAGCTGGTGCATGTTTTGTAGCTaaaa > 6:538721/1‑139 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 1:249091/138‑1 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACt < 8:678347/140‑1 (MQ=255)
cGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTATTTTTCAGATGTGCGACCAGCAATAATTTTCATTACTCGCACTTTTACCAATAACAGCGCGCATTTCCAGGTTTTGTAGCTAAAca > 4:734702/1‑137 (MQ=255)
cGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTGAGAGGGGCGACCAGCAATATTTTGGAGTACTCGCACGTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaaat > 2:525264/1‑136 (MQ=255)
cGTGCGGTAACCTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTTCAGAGGTTCGACCAGCAATATGTTGCAGGACACGCACTTTTACCCCTAACGGCGCGCTTGTCCAGGTTTTGTAGCGaaaat > 2:153804/1‑136 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGGCCAGCAATATGTTGCAGTACTCGCACTTTTGCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGAtg > 6:121887/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTTCGCCCAGCAATATGTTGCAGTACTCGCACGTTTACCACTAACTGCGCGCAGTTACAGGTTTTGTAGCTAAACTGATc > 6:431814/1‑140 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGAAGAGGTGGGACCACCAATATGTTGGAGTTATCGCCCTTTTACCACTAACTGGGCGCTGTTCCAGGTTTTTTAGGTAAACTggta > 7:240646/1‑137 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTCTCTTTTGCAGCGGTGGGGCCAGCAATATGTTGCAGTAATCGCACTTTTACCCCTAACAGCGGGCTGGTGCAGGGTTTGTTGCAAAAcgggtc > 7:472376/1‑135 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTCTCTTTTGAAGAGGGGCGTCCAGCAAAATGTTGGAGGACTCGCAATTTTACCAAGAACTCCGCGCGGTTCCACGGTTTGTAGCAAAAATGaag > 8:221959/1‑138 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGAGACCAGCAATATGTTGAAGGACTCGCACGTTTCCCACAAACAGCGCGCTGTTCCAGGTTGTGTAGCGAAACTGATc > 2:647955/1‑138 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCGTTTGCAGAGGTTCGCCCAGCAATATGTTTCAGTATTCGCCCTTTTACCCCGTACTGCGCGCTGTTGCAGGTTTTGTAGCGTAACTGATc > 4:420704/1‑138 (MQ=255)
aCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGGCCCGCAAAATGTTGCAGTACACGCACATTTCCCCATAACTGCGCGCGGGTACAGGTTTTGTAGCTAAACTTATATTTATCa > 6:479589/1‑140 (MQ=255)
cGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCGCTTTTGCAGAGGCGCGACCAGCAATATGTTGCAGTACTCGCACTTTTGCCCCTAACTGCGCGCTGTTCCAGGTTTTGTAGGAAGACTGATCTTTATCAAGcc > 6:374864/1‑139 (MQ=255)
aaTCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGc < 5:611557/140‑1 (MQ=255)
gCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTTCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACg < 5:708999/140‑1 (MQ=255)
gCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACg < 5:314423/140‑1 (MQ=255)
ttCAATCCGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGAt < 8:584265/140‑1 (MQ=255)
aaaTCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAGTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCg < 5:400181/139‑1 (MQ=255)
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GCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAA > NZ_CP022686/3264947‑3265219
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
