Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,265,084 |
T→G |
15.1% |
N77T (AAC→ACC) |
ytfJ ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,265,084 | 0 | T | G | 15.1%
| 280.7
/ 17.1
| 167 | N77T (AAC→ACC) | ytfJ | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base T (58/80); new base G (26/3); total (84/83) |
| Fisher's exact test for biased strand distribution p-value = 2.43e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 177 total aligned reads displayed.
GCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCA > NZ_CP022686/3264947‑3265218
|
gccttttATTACACTCCAGACTGCGCCGCACAAACATCCCAGAACCCGGAATCGCGGCGTCGGTGTTACCAATGGTGGTGCTCTGGTCACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGt < 8:121702/135‑1 (MQ=255)
gCTTTTTATTACTCTCCCGACTGCAGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTCACGATCGTGCGGTAACTTCGCTGAATTAAGCGCTTCAATCAGCGTCGCGttt < 4:546709/140‑1 (MQ=255)
cTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGtt > 7:764793/1‑138 (MQ=255)
tttttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGGTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGttttt < 2:886675/140‑1 (MQ=255)
ttattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtctc < 1:384295/140‑1 (MQ=255)
attaCTCTCCAGACAGCTGCGCACAAACATCCCTGAACCCGTCAGCCCGGCGTCGGTGTTAACAATGGTGGTTGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGGGTCGCGTTTTtctc < 7:528355/138‑1 (MQ=255)
aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACGCGGAATCGCGTCGTCGGTGTTAACTATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg < 1:377394/140‑1 (MQ=255)
aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg < 3:907245/140‑1 (MQ=255)
aCTCTCCAGACTGCTGCGCACAAACATCCCAGAACCCTGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCTCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCttt < 8:816796/138‑1 (MQ=255)
ctctCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGc > 6:245169/1‑140 (MQ=255)
ctctCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTgg > 1:416447/1‑139 (MQ=255)
actcCAGACTGCTGCGCACAAACATCCCGGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg < 7:207595/137‑1 (MQ=255)
ctcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACTATGGTGGTGGTCTGGTAACTTTCGTGCGGTAAGTTCGGTGATGTATTCGCTTCAATCAGCGTCGCGTGTTTCTGATTTgg > 8:107500/1‑137 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTCTCTTTTGgaga > 5:202937/1‑140 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCGGATTTAATCGCTTCAATCAGCGTCCCGTTTTTCTCTtgtggctg > 2:161501/1‑136 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCaga > 7:597323/1‑138 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCaga > 8:276041/1‑138 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCGCattttccgctg > 6:708962/1‑133 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAAT‑GTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGt < 4:651130/140‑1 (MQ=255)
aCTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGt < 7:819600/138‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 5:692121/140‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 3:421202/140‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCGGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 4:509952/140‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCCATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 5:512609/140‑1 (MQ=255)
gctgcGGACAAACATCCCTTATCCCGGAACAGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTGCAATCAGCGTCTCTTTTTTCTATTTTGCAGAGGTGCGAc < 1:106998/140‑1 (MQ=255)
gctgcGCACAAACCTCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACATTGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 1:773902/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGCACCCGGAATCGCGTCGTCGGTGGTAACAATGGTGGTGGTCTGGTAACGATCGTGCTGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 6:74103/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCTCTTAGTCTGTGTTAACAATGGAGGTGGTCTGGTCACGATCGTGCGTTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 7:424967/138‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 5:466896/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 4:470754/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 3:262660/140‑1 (MQ=255)
gctgcGCACAAACATAGCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTTCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 3:767572/140‑1 (MQ=255)
gctgaGCACTAACATCCCTGAACCCGGAAGCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 3:177438/140‑1 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc > 4:215206/1‑140 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTTGAGAGGTgaggcc > 6:195784/1‑135 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGGGTTCTGGTAACGATAGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTAGCTTTTTGAGAGGGGAGAcc > 3:100412/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTGTGTTTTGCAGAGGTGGGAccc > 1:810597/1‑139 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 4:202354/140‑1 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTTGGATTTTTCAGATGTGGGAccc > 7:150831/1‑137 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGGGGTGGTCTGGTAACGCTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATGTTTTTGCGAGGTGCGCCCAGc > 1:484735/1‑140 (MQ=255)
cacaAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGGGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGACCAGc > 8:522127/1‑138 (MQ=255)
acaAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAat < 6:268437/140‑1 (MQ=255)
caAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAata < 3:296057/140‑1 (MQ=255)
tCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTATTTTGCAGAGGTGCGACCATCAATATTTTGc > 2:649251/1‑140 (MQ=255)
tCCCTGAACACGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCTCGGATTTAATAGCTTCAATCAGCGTCGCGGTTTAGACTTTTTGTCATGTGCGAACAGCAACAtttttt > 5:794761/1‑138 (MQ=255)
cccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa < 3:531534/140‑1 (MQ=255)
ccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGttttt > 4:121293/1‑104 (MQ=255)
aCCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTc < 6:85953/140‑1 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCAGAGGTGCGACCAGCAATATGTTTGAGTACTccgac > 2:10951/1‑136 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGCAGTGGTGCGCCCCGGAATATGTTGCAGTTATCGCAc > 5:894511/1‑140 (MQ=255)
gAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTTCAGAGGTGCGCCCAGCAATATGTTTCAGTAATAGCAca > 2:956927/1‑139 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc < 7:276041/138‑1 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 5:97276/140‑1 (MQ=255)
aaTCGCGGCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc < 7:268665/138‑1 (MQ=255)
ccgcgGCGTCGGTGGTAACAATGGGGGTGGTCTGGTACCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGCGCGACCAGCAATATGTTGCAGTACTCGCACtt < 8:566743/137‑1 (MQ=255)
cgtcgtCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGCCCAGCAATATGTTTCAGTACTCGCACATTTccc > 2:285123/1‑140 (MQ=255)
cgtcgtCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTacc > 2:657942/1‑140 (MQ=255)
gtTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 4:675634/140‑1 (MQ=255)
tAACAATGGTGGTTGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 7:395695/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 2:591922/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 5:859170/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 1:13906/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAAGCGCGTCAATCAGCGTCGCGTTTTGCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCCGTACGCGCACTTTTCCCACTAACTgcgcg < 5:145641/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGAGCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 3:86242/140‑1 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTTTAGTTTTGAGAGGTGCGACCAGAAATATTTTTGAGTACTCGCAATGTTCCCCAGAACTGCGCGCGGttac > 2:476926/1‑138 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCAGCGGTTCGCACCGCAATAAGTTTGAGTACTCCCACATTTCCCACAAAAAGCGCGCAGttac > 4:305503/1‑138 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTAGTTTGCATAGGTGCGACCCGCAATATGTTTGAGTAATAGCACTTTTCCCACTAACAGCGCGCTGGTcc > 3:750751/1‑140 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTGTTTTTCAGAGGTGCGACCAGCAATATGTTGCAGGACTAGCACTTTTCACACTAACTGCGCCCGGttgc > 1:817652/1‑138 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGAATTTTGCAGAGGTGCGCCCAGCAATATGTTGCAGTACTCGCACTTTTCACACTAAATGGGGGCTGTTCCAg > 2:499251/1‑140 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc > 8:758347/1‑112 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCGTTTGCAGAGGTGCGACCCGCAATATTTTTCAGTACTCGCACATTTCCCACTAACTGCGCGCAGTTGCAg > 2:746656/1‑140 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGttt < 4:310490/140‑1 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGt < 8:597323/138‑1 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATAGTGTGCCGGGGTGCAAACATGAAAAATTTGCAGGTCTCGCCCTTTTACCACTAACTGCTCGGTGGACCAgct > 8:142751/1‑136 (MQ=255)
gtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGAAGAGGAGGGACCCCCCATATCTTTCAGTAATCGCCCTTGTACCACTAACTGAGCGCGGTTCCCTGtttt > 1:611856/1‑140 (MQ=255)
gagacagATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAg < 3:653525/134‑1 (MQ=255)
gTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCAGAGGTGCGACCAGCAATATGTTGGAGTACTCGCACTTTTACCACAAACTGCGCGCTGTTACAGGTTTTGTAgg > 3:459661/1‑139 (MQ=255)
gTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGGGACCAGCAATATGTTGCAGTACTCGCACTTTTACCCCTAACTGCGCGCTGTTCCAGGGTTTGTAgg > 4:768114/1‑139 (MQ=255)
aaCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTTCAGAGGTTCGACCAGCAATATGTTGCAGTACTCGCACTTTTGCCAATAACAGCGCGCTGTTCAAGGGTTTGtttc > 7:55602/1‑135 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGGAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACt > 2:510609/1‑140 (MQ=255)
tCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTATTTTTCAGAGGTTCGACCACCAAAATGTTGCAGTACTCGCACATTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAAc > 8:703622/1‑138 (MQ=255)
tCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATGTTTTTCAGACGGGCGCCCAGCAAAATGTTTCAGTACAGGCCCATATCACACTAAAAGAACGCGCTTAAAAGTTTTTTAGCTaaaa > 8:627559/1‑137 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCAGAGGTGGGGCCAGCAATATGTTGCAGTACTCGCCCGTTTTCCACTAACTGCGCGCGGGTGCAGGGTTTGTTGCTAAAATGAta > 1:638749/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTGGAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGGTGCAGGGTTTGTTGCTAAAATGAta > 1:655275/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGGGCCCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGGTAAACTGATc > 4:598002/1‑140 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 1:864738/111‑1 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGGGCGACCAGCAATATGTTTCAGTACTCGCACTTTTACCACTAAATTCGCGCGTTTACAGGGTTTGTAGCTAAACTTAtg > 6:361318/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCGTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTTCTCGCACTTTTCCCCCGAACTGCGCGCGGTTCCAGGGTTTGTTGCTAAACTggtg > 2:842961/1‑137 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTTTCTTTTTCAGAGGTGCGCCCAGCAATATGTTTGAGTAATAGCACCTTTGCCACTAACTGCGGGCTGGTGCAGGTTTTGTTGCTAAAcgggtg > 1:728285/1‑135 (MQ=255)
tGCGGTAACTTAGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTAGAATTTGCACAGCTTCGCCCAACAATAATTTGCCGTTCACGCCCCTTTACCACAAAAAGCGCGCTGTGTCCTGTTTTGTAGCTaaaaagata > 2:37681/1‑134 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGACGTGAGACCAACAATATTTTGGAGTTATCGCACCTTTCCCAAAAAATTCGCGCTGGTGAAGGGTTTGTAGGTAAACTGAta > 8:44674/1‑137 (MQ=255)
aaCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTATCTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATc < 4:604229/140‑1 (MQ=255)
aCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATGTTTTTCAGAGGTTCGGCCAGCAATATTTTTCATTTCTAGCAGTTTTTGCACGAAATGCGCGCGTTTCCAGGTTTTTTTTGTAAAATGATGTTTTTCa > 5:593486/1‑140 (MQ=255)
aCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGGGCGACCAGCAATATGTTGCAGTACTCGCAATTTTACCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACAGATCTTTATCa > 4:716721/1‑140 (MQ=255)
gATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTGCAGAGGTGCGCCCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAAATGCGCGCTGTTCCAGGTTTTTTAGCTAAACTGATCTTTATCAAGCACCaa < 3:190219/140‑1 (MQ=255)
gATTTAATCGCTTCAATCAGCGTCGCGTTTTTGGCGTTTGCAGAGGTGCGACCAGCCATATGTTGGAGTTCTCGCACTTTTCCCCCTAACGGCGCGCTGTTCCAGGTTTTGTAGCTAAACGGATCTTTATCAAGCAcc > 8:201141/1‑138 (MQ=255)
gATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCAGAGGGGCGACCAGCAATATGTTGCAGTACACGCACTTTTACCACTAACTGCGCGCGGGTCCACGGTTTGTAGCTAAACATATCTTTATCAAGCAccca > 2:689126/1‑138 (MQ=255)
gCTTCAATCATCGTCGCGTTTTTCTCTTTTGCAGAGGGGCTACCAGCAATATGTTGCAGTACTCGCACTTTTCACACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACg < 6:441620/140‑1 (MQ=255)
gCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACg < 1:19534/140‑1 (MQ=255)
gCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACg < 1:106790/140‑1 (MQ=255)
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GCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCA > NZ_CP022686/3264947‑3265218
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
