Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,265,084 |
T→G |
18.5% |
N77T (AAC→ACC) |
ytfJ ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,265,084 | 0 | T | G | 18.5%
| 284.1
/ 21.0
| 182 | N77T (AAC→ACC) | ytfJ | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base T (53/91); new base G (36/2); total (89/93) |
| Fisher's exact test for biased strand distribution p-value = 2.48e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 189 total aligned reads displayed.
TTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAAT > NZ_CP022686/3264949‑3265220
|
tttttATTAGTCTCCAGTCTGCTGCGCACAAACATCCCTGAACGCGGAATCGCGTCGGCGGTGTTATCAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTATTCGCTTCAATGAGCGTCGCGttt < 3:725735/138‑1 (MQ=255)
tttttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGttttt < 8:673867/140‑1 (MQ=255)
tttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCCGCGTCGCGgttttgt > 7:490377/1‑138 (MQ=255)
ttattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCTGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtc < 3:58122/138‑1 (MQ=255)
tattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCTGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACTATCGTGCGGTAACTTCGATGATTTAATCGCTTCAATCAGCGTCGCGTTTTtct > 4:363134/1‑138 (MQ=255)
tattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTTCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtct > 2:1035984/1‑138 (MQ=255)
tattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtct > 3:999894/1‑138 (MQ=255)
attaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCtt < 7:26867/140‑1 (MQ=255)
attaATCTCCAGACTGCTGCGCACAAACATCACTGAACCCGGAATCGCGTCGTCTGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTTCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTAGAGTTTTtctc < 6:150638/138‑1 (MQ=255)
aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGAGCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCttt < 4:3652/138‑1 (MQ=255)
ctcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGGGGGGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCag < 8:324096/140‑1 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGACCCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGCaga > 3:159303/1‑138 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTTCatc > 4:304874/1‑136 (MQ=255)
cAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGGGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCaga > 6:49344/1‑138 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTg < 5:284590/138‑1 (MQ=255)
tgctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAAGGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTTCTGTTTTGCAGAggggggg > 7:688106/1‑135 (MQ=255)
ggtgcTCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCTGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 1:772098/136‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 5:502357/138‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGGCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 8:487799/140‑1 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtatc > 7:695826/1‑121 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc < 1:514175/138‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc < 1:103858/138‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 8:336723/140‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 8:264666/140‑1 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTTTTAACAATGGTTGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGGAGTTTGCAGAGGTGCGcccc > 2:168264/1‑137 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTGTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGAGGTggggccc > 3:190370/1‑132 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCCGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGGccc > 5:852475/1‑137 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTGTTTTGCAGAGGTGCGAccc > 2:824249/1‑137 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGcccc > 3:698609/1‑137 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCGTTTGAAGAGGTGCGCCCa > 6:10225/1‑138 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGGTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTAATTTGCAGAGGTGGGAccc > 3:663817/1‑137 (MQ=255)
gcACAAACATCCCTGCACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 6:878447/138‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCCGAGGTGCGACCAg < 6:785123/138‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 7:379863/140‑1 (MQ=255)
cacaAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCaa < 8:153690/140‑1 (MQ=255)
cacaAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCATTTTCTGAGGTGCGAACAGc > 5:633045/1‑138 (MQ=255)
cacaAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTTCATAGGTGCGACCAGc > 2:859370/1‑138 (MQ=255)
aaaaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCATCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAata < 8:269422/139‑1 (MQ=255)
tCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGtt < 2:519803/138‑1 (MQ=255)
cccTGAACCCGGAATCGCGGCGTCGGTGGTAACAATGGTGGTGGGCTGGTAACGATCGGGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTg < 4:802001/138‑1 (MQ=255)
gaccccGGAATCGCGTCGTCGGTGTTAACAATGGGGGTGGTCTGGTAACGATCGTGCGGTAACATCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAc < 7:152834/137‑1 (MQ=255)
gAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCATCAATCAGCGTCGCGTTTTTATATTTTGCATAGGTGCGACCAGCAATATTATTCAGTaa > 7:216670/1‑139 (MQ=255)
aCCCGGAATCGCGTCGTCGGTGTTAACTATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTGGGCCCACCAATATTTTGCATTaa > 4:693327/1‑137 (MQ=255)
ccGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTTCATAGGTGAGACCAGCAAAATTTTGCAGTACta > 3:1013209/1‑137 (MQ=255)
cGGAATAGCGGCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCg < 1:937208/138‑1 (MQ=255)
aaTCGCGGCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTGCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 7:591024/140‑1 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 3:693421/138‑1 (MQ=255)
gtcgtcGGTGTTAACAATGGTGGAGGGCTGGTAACGATCGTGCGGTAACATCGCTGATTTAATCGCTTCAATAATCGTCGAGTTTTTATAATGTGAAGAAGAGCGACAAACTAAATGTTGCAGTGAGCGCACTATTaccc > 8:459874/1‑139 (MQ=255)
tcgtcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTGCAGAGGTGCGACCAGCAATATGTTGGAGTACTCGCACTTTTccc > 4:44622/1‑138 (MQ=255)
cgtcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCa < 5:188798/138‑1 (MQ=255)
taagtaTGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 3:133987/133‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 4:892043/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 5:349548/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 1:701248/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 6:586309/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 3:314976/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 4:249398/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGGTGCAGTACTCGCACTTTTCCCACTAACTgcg < 5:177373/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCGGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 8:12850/140‑1 (MQ=255)
tAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTGCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 1:1032031/138‑1 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCTGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGtt < 4:399223/138‑1 (MQ=255)
gtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCGGTTTTGGAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGttg > 3:918843/1‑137 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGCTTTAATCGCTTCAATCAGCGTCGCGTTTTTTTCTTTTTCAGAGGTGCGCACAGCAAGATGTTGCAGGACTCGCCAGTTTTCCACTAAATGGGCGGTGTTcg > 1:881008/1‑137 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCATCGTCGCGTTTTTATATTTTGCAGAGGTGCGAACACCAATATTGTGCAGTAAACTCACTTTTCCAACTAACTGAGCCCTTTTcc > 5:409972/1‑138 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCAGAGGTTCGACCAGCAAAATGTTGCAGTACTCGCACTTTTACCAAAAACTTCGCGCTGttac > 5:269150/1‑136 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTGCAGAGGTGCGCCCAGCAAAATTTTTCACTACTCGCACTTTTCCCCCTAACAGCGCGCGGTTcc > 3:586976/1‑138 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGGCCAGCAATATTTTGCAGTAATCGCCCTTTTGCCACTAGCTGCGCGCTGTTcc > 2:27857/1‑138 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGACGTGCGACCAGCAATATGTTGCCGTAATCGCCCTTTTCCCACTAACTGCGCGCGGtgac > 6:748215/1‑135 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGGCGCGGTTTTCTCTTTTTCATATGTGCGACCAGCAATTTGTTGCAGTACTCGCACGTTTACCACTAACTGCGCCATGTTca > 4:938836/1‑137 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGt < 6:416330/138‑1 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGt < 1:824249/138‑1 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTGCGACCAGCAATATTTTGGAGTACACGCAATTTTGCCACTAACTGCGCGCTGTTGCAggg > 1:802785/1‑137 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCCCTAAATGAGCGCTGTTCCAGGt > 4:675518/1‑138 (MQ=255)
cTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCATAGGTGCGACCAGCCATATGTTGCAGTACACGCACTTTTACCACAAACGTCGCGCGGTTACAGGgttt > 1:1026164/1‑138 (MQ=255)
cTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTAGCGTTTTTGTATGTTGCAGAGGTGAGACAACCAATATGTTTCAGTAATCGCACTTTTACCACTAACTGAGAGCAGGTACAGGTTTTGt > 7:333004/1‑140 (MQ=255)
gTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTGTTTTGCAGAGGTTCGCCCAGCAATAATTTGCAGTACAGGCACTTTTGCCACTAACTGCGCGCTGTTGCAGGgttttttgc > 7:438892/1‑135 (MQ=255)
aaCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATTTTGCAGTACTCGCACTTTTACCACATACAGCGCGCGGTTCCAGGTTTTGTAgg > 6:199941/1‑137 (MQ=255)
aaCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTAAGTTTTTCAGGGGTGCGCCCCGCAATATGTTGGAGTACTCGCAAATTTACAACTAACTTCGCGCTGTTTCAGGGTTTGTAgg > 6:678447/1‑137 (MQ=255)
ctCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 6:937231/137‑1 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCTATCAGCGTCGCGTTTTTCTCTTTTGCAGATGTGAGACCAGCATTATGTTGAAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTata < 5:126179/138‑3 (MQ=255)
tCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAAc < 6:794864/138‑1 (MQ=255)
ctGCGGTAACTTCGCTGATTTAATCGCTTCTATCATCGTCTCGTTTTTCTCTTTTGCAGATGTTCGACCAGCAATTTGTTGCAGTACTCGCTCATTTCCGACTAACTGCGCGCTGTTCCAGCTTTTGTAGCTAAACTg < 2:519353/137‑1 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGCCCAGCAATATGTTGCAGGACTCGCACGTTTCCCACTAACTGCGCGCTGTTGCCGGGTTTTTAGCTAAACTGAta > 8:893184/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTGTTTTTCAGAGGTGCGGCCAGCAAAATTTTGGAGGAATCGCCCTTTTACCACAAACTGCGCGCGGGTGCAGGGTTTGTTGGTTAACTGAta > 7:430186/1‑139 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGAGGTGCGACCCGCAATATGTTGCAGTACTCGCACGTTTGCCACTAACTGCGCGCTGTTCCAGGGTTTTTAGCTaaaaagata > 2:659805/1‑132 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCCGCAATATGTTTCAGTACTCGCACTTTTACCACTAACTGCGCGCTGTTGCAGGTTTTGTAGCGAAACAGAta > 2:92439/1‑137 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTTCGCCCAGCAATATGTTGCAGTACTCGCACATTTCCCAATAAAAGCGCGCTGTTCAAGGTTTTTTAGCTAAACTGAta > 2:197426/1‑137 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGCAGAGGTGCGCCCAGCAATATGTTGCAGTACTCGCACTTTTCCCACGAACTGCGCGCGGTTACAGGTTTTGTAGCTAAACTGATc > 6:543801/1‑138 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGCAGAGGTGCGACCAGCAATATTTTTGAGTACACGCACATTTCACACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAAATGAta > 1:382751/1‑137 (MQ=255)
tAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCttt < 1:168264/138‑1 (MQ=255)
tAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCCGAGGTGCGCCCAGCAATATTTTGGAGTGAGCCCCCATTTCCCCCTAACTGGGGGGGGTGGCAGGGTTTGTAGCGAAAATGATCTTTAt > 8:234317/1‑140 (MQ=255)
gCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGc < 6:277141/138‑1 (MQ=255)
cTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCa < 3:59973/138‑1 (MQ=255)
cTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCGTTTGCAGCGGTGCGACCAGCAATATTTTGCAGTACTCGCACTTTTACCACAAACAGCGCGCGGTTGCAGGGTTTGTAGCGTAACTGCTCTTTATAAAGCa > 4:164745/1‑138 (MQ=255)
tGATTTAATCGCTTCAATCAGCGTCGCTTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCa < 8:785486/140‑1 (MQ=255)
taTCTCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGc < 8:864518/139‑1 (MQ=255)
tCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCAc < 3:364475/64‑1 (MQ=255)
tCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGc < 2:232778/138‑1 (MQ=255)
tCGCGGTTTTGTCTTTTTCAGAGGGGGGACCAGCAATATGTTGCAGTACACGCACTTTTCCCACTAACTGCGCGCGGTTCCCGGTTTTGTAGCTAAACTCCTCTTTTTCAAGCACCAACTAGCCACGCTCGGTTATgg > 2:617606/1‑137 (MQ=255)
gTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAAt < 1:331633/138‑1 (MQ=255)
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TTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAAT > NZ_CP022686/3264949‑3265220
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
