Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,460,579 |
T→A |
17.7% |
intergenic (‑1/‑157) |
yhjY ← / → tag |
autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,460,579 | 0 | T | A | 17.7%
| 383.2
/ 27.6
| 186 | intergenic (‑1/‑157) | yhjY/tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| Reads supporting (aligned to +/- strand): ref base T (107/44); new base A (2/33); total (109/77) |
| Fisher's exact test for biased strand distribution p-value = 4.41e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 187 total aligned reads displayed.
CTCTGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATC > NZ_CP022686/2460441‑2460714
|
ctctGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTa > 5:962334/1‑140 (MQ=255)
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAaca > 5:815691/1‑140 (MQ=255)
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAaca > 8:371384/1‑140 (MQ=255)
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAaca > 6:11792/1‑140 (MQ=255)
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGCCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAacc > 6:1015786/1‑139 (MQ=255)
gtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAac > 1:882132/1‑138 (MQ=255)
ggggAATGTCCGGGTGGCTTATAAACTATATTTTCTTGTTGCCCGGCGAACTGGGTGGTGAAAAAAACGCCACTCAATCCCCCGCTCGCACGCCGGCTTCGCTGCCAGCGACCACCGC‑TTTTTTTAATGATAATAAccac < 8:615931/138‑1 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACTCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACg > 5:647385/1‑140 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAaca > 3:91091/1‑138 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGATGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAaca > 1:329775/1‑138 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACAACGCTCGCAAGCAGGCTTAGCTGCCAGCGCCCACCGC‑TTTTTTTTATGATCATTAACACg > 7:864567/1‑140 (MQ=255)
gAATGTACGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGAGTTGAGAAAAAAGGCACTGATTACCACGCTCTCAAGCAGGCTTAGCTGACAGCGACCACCGA‑TTTTTTTTATGATCATTAACACg > 3:456631/1‑138 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTcc > 7:538179/1‑140 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTATTTATGATCATTAAAACGACTcc > 6:678803/1‑140 (MQ=255)
gTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCa > 6:862637/1‑140 (MQ=255)
tCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTCCCACGCTCGCAAGCAGGCTTAGCTTCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACTACTcc > 1:668299/1‑138 (MQ=255)
tCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTcc > 1:122286/1‑138 (MQ=255)
ccGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGCCAAGAGC‑TTTTTTTTATGATCATTAACACGACTCCAgg > 5:488977/1‑140 (MQ=255)
ccGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAgg > 6:955757/1‑140 (MQ=255)
gggTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTATTTATGATCATTAACACGACTCCAgg > 2:3165/1‑138 (MQ=255)
gTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TATATTTTATGATCATAAAAACGACTCCAGGGa > 1:1079476/1‑138 (MQ=255)
gCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTTCCAAGCTCGCAAGCAGGCTTAGCTGCCAGCGCCCACCGC‑TTTTTTTTATGATCATTAACACGCCTCCAGGGAAgcgc > 8:528772/1‑140 (MQ=255)
tATCAACGATATATTCTTGTTTCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGcc > 3:1115377/1‑138 (MQ=255)
aaaaaCTATATTTTGTTGTGCCCAGGCTTACGCTGTTGTCATAAAAACGCCACTTATAACCACGCTCCCAAGCAGGCTTTGCTCCCAGCTACCACCGA‑TTTTTTTTATGAGCATTAACACGACTCCAGGGAAGAGCCGaa < 6:389414/137‑1 (MQ=255)
ctatatatTCTTCGTGCCCGCCGTACGCGTTGTTGACAAAACAGCCACTCAATCCCACGCCCGCCAGCTGGCTTCCCCGCCCGCCACCACCCT‑TTTTTTTTATCAAAATAAACACGACTCCAGGGAAGAGCCGAATTCgg < 6:749120/138‑1 (MQ=255)
atatttTCTTGTTGCCTGGAGAAAGTTGTGGTTACAAAACAGGCACATATTCACCCGGTGCCAAGCAGGCTAAGGTGCCTGCCACCACCGC‑TTTTTTTTATGATCATTAACACAACTCCAGGGAAGAGCCGAATTCGGCa < 7:141860/140‑1 (MQ=255)
ataatttCTTGTTGCAGGGCTTAAGCGTTGTTTACAAAACCGGCCCTGATAACCACGCCCCAACGCAGCAATCCCCCCCAACTACCACCGA‑TTTTTTTATTTATCATAACCACGACTCCAGGGAAGAGCCGAATTCgg < 4:747917/133‑1 (MQ=255)
atatTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCGAGGGAAGAGCCGAATTCGGCa > 4:472833/1‑138 (MQ=255)
ttgttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATattatt > 7:844075/1‑140 (MQ=255)
tgttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTATTTTATGATCATTAACACGACACCAGGGAAGAGCCGAATTCCCCAATattattt > 8:708415/1‑139 (MQ=255)
gttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATattatt > 4:675799/1‑138 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 7:772403/1‑140 (MQ=255)
tgCCCGGGGTAAGCGGTGTTGAGAAAAACGCCACTGATACCCCCGCCCCCACGCCGGCTTCGCGGCCCGCCCCCCCCGC‑TTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 6:1083472/140‑1 (MQ=255)
tgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGt > 2:707017/1‑138 (MQ=255)
ggCCAGTCGTACGCGTTGTTTAGAAAAAACCCCCTGATTACCCCGCTCGAACCCAGGCTTAGCTGCAAGCGACCACCGC‑TTTTTTTTATGAACATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 8:1011031/139‑1 (MQ=255)
ggCCAGGCGTAAGGTGTTTTGAGAAAAAAGGCACTTATTCCCCCGCGCCCAAGCTGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 8:521791/139‑1 (MQ=255)
gCCTGGCGTAAGCTGTGTTGAGAAAAAAGGCAATTATAACCCCCCTCCCACGAAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATTATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc < 2:222565/138‑1 (MQ=255)
cccggCGTAAGTTGTGTTGAGAAAAAAGGACCTTATTACCACGCTCGCAAGCCGGCTTAGCGGCCTGCTACCCCCGT‑TTTTTTTTATTATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 3:220295/135‑1 (MQ=255)
cAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATTTTATTGTCAt > 1:1094007/1‑138 (MQ=255)
cAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAt > 3:441838/1‑138 (MQ=255)
cAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAt > 1:365890/1‑138 (MQ=255)
cAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAt > 2:772042/1‑138 (MQ=255)
gggCTTACGCTGTGTTTATAAAAAAGGCACTGATTACCACGCTCGCAAGCCGGCTTAGCTGCCAGCTACCACCGC‑TTTTTTTTATTATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 6:499900/139‑1 (MQ=255)
agggggaaGCTGTGTGGAGAAAACTGGCACTTATTACGCCGCGCGCAGCCTGTCTTAGCTCCCAGGTACCACCGT‑TTTTTTTTATGATCATTCACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAtt < 2:549688/132‑1 (MQ=255)
gCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt > 2:414065/1‑138 (MQ=255)
tgtgTTTACAAAAAAGCCACTTTATACCACGCTCCCACGCAGGCTTAGCGGCCTGCGACCACCTC‑TTTTTTTTATTATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 3:698959/138‑1 (MQ=255)
tgtgTTGAAAAAATCCCCAATTATTACCCCGCTCCCAAGCTGGCTTAGGTCCCTGCCACCAGCTT‑TTTTTTTTTTTATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGata < 7:517770/140‑1 (MQ=255)
ggtgtTGACAAAAATGCCATTTATTACCCCGCTCGCTCGCTGGGTTCGCTGCCAGCTACCACCGC‑TTTTTTTTATTATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 3:501707/137‑1 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGatata > 5:774677/1‑139 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 5:104758/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 6:899274/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 5:119056/1‑140 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGATGGatata > 1:883200/1‑137 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAggctgtc > 1:385694/1‑133 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 3:97303/1‑138 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACAGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGACAATATTATTGTCATTGTATGAAGGaaata > 2:95474/1‑137 (MQ=255)
aagagaAAAAAGGCACTGATTACCACGCTCGCACGCAGGCTTAGCTGCCAGCGACCACAGC‑TTTTTTTTATGATCATTAACACGACTCCAGTGCAGAGCCGCATTCGGCAATATTATTGTCCTTGTATGAAGGATATc > 4:298782/3‑138 (MQ=255)
ttataaaaatGGAACTGATTACCACGCTCGAAAGCAGGCTTCGCTGCCAGCGACCACCGA‑TTTTTTTTATGATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 4:478425/134‑1 (MQ=255)
tcataaaaacGCCACTGATTACCCCGGCCGCAAGCCGGCTTACCGGCCACGCACCACCGC‑TTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 6:638000/136‑1 (MQ=255)
tGATAAAAAAGGCACTTATTCCCCCGCTCGCAAGCTGGTTTAGCGGCCAGCGACCCCGTT‑TTTTTTTTATTATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 5:205240/140‑1 (MQ=255)
tGACAAAAACGGCACTGATTACCACGCTCCCACGCAGGTTTAGGTCCCAGGTACCCCCGC‑TTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 4:585564/138‑1 (MQ=255)
ccaaacaaCGCACTTATAACCACCCCCGCACGCGGGATTTGCCGCCAGCGACCCCCGC‑TTTTTATTAAAATAATACCCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGATGGATATCGGGCa < 5:355251/138‑1 (MQ=255)
agaAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCAAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCa > 7:751/1‑140 (MQ=255)
aaaaaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta > 5:53809/1‑140 (MQ=255)
aaaacGGCACTCATTACCCCTCACCCACTCTGTCGTAGGTGCCAGCTACCCCCGC‑TTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGATGGATATCGGGCAt < 4:128465/138‑1 (MQ=255)
aaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCAACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGTCAtagta > 6:171872/1‑140 (MQ=255)
aGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagt > 2:915682/1‑138 (MQ=255)
aGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTATTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagta > 1:241486/1‑138 (MQ=255)
tacACTGATAACCACGATCGCAAGCTGTCTTCCGTCCCAGCGACCACCGT‑TTTTTTTTTTGATCAAAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 1:463990/136‑1 (MQ=255)
gtcACTTATTACCACGCTCGCATCCCGGTTTCGCGGCAAGCGACCCCCGT‑TTTTTTTTTTTATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 6:183295/138‑1 (MQ=255)
ggCACTTATTACCACGCTCCCAACCAGGCTTAGCTGCCCGCGACCCCCGT‑TTTTTTTTATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 2:516114/138‑1 (MQ=255)
ggCACTGATAACCACGCTCGCACGCAGGCTTAGCTGCCCGCGACCACCGC‑TTTTTTTTATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 4:533312/138‑1 (MQ=255)
gccACTTATTACCCCGCTCCCACGCTGGCTTAGCGGCCCGCCACCACCGT‑TTTTTTTTATGACAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 6:319657/138‑1 (MQ=255)
gccACTGATAACCCCGCTCGCACGCCGGCTTAGCTGCCAGCCACCACCGC‑TTTTTTTTATTAAAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 3:561177/136‑1 (MQ=255)
tatacccACGCTCGCAACCTGGCTACCCTGCCAGCTCCCACCGC‑TTTTTTTTATGATAATTCACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGt < 2:487978/133‑1 (MQ=255)
taTTACCCCGCGCGCACCCTGTCTTCGCGGCCCCCGACCACCGC‑TTTTTTTTATGACAATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGt < 4:227124/137‑1 (MQ=255)
gATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGt > 2:499837/1‑138 (MQ=255)
gCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATAttt > 7:462517/1‑139 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATAttt > 1:184593/1‑137 (MQ=255)
gCAAGCAGGCTAAGCTGCCAGCGACCACAGC‑GATTATATATGATCAGAAACACGACTACAGGGAAGAGCCGAAATCGGCAATTTTATTGTCATTGTATGAAGGATATCGTGCAAACTAGCCCTGTATTAAATATTGAc > 2:112612/1‑138 (MQ=255)
cAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACttttt > 1:697858/1‑138 (MQ=255)
cAGCGACCACCGC‑TTTTTTTTATTATCATTAACACGACTCCAGGGAAGAGCCTAAGTCGGCCATATTATTTTCATTGTATGAAGGATATCGGGCATAGTAGCCCGGTATTAAAGATTGACATTGTCAACGATGCGTCAAg > 6:1009804/1‑140 (MQ=255)
gCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg > 1:107045/1‑89 (MQ=255)
gCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 2:107045/89‑1 (MQ=255)
cGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAAGTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGa > 4:119823/1‑138 (MQ=255)
ccGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGACGAATTCGGCAATATTATTGTCATTGTATGATGGATATCGGGCATAGTAGACCTGTATTAAATATTGACTTTTTCAGAGATGATTCAAGAAAAGCTGc > 7:189713/1‑140 (MQ=255)
tattatAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAAtttt < 2:682926/138‑1 (MQ=255)
tATGATCATTAAAACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATTAAGGATATCGGGCATAGTAGCCCTGTTTTAAATATTGACTTTTTCAACGATGCGTCAAGAAAAGCGGCTGAAATTTTTa > 8:864288/1‑140 (MQ=255)
tATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAAtttt < 1:548874/138‑1 (MQ=255)
ttaTCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTa < 1:3165/136‑1 (MQ=255)
atctatAACACGACTCCACGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTAAGAAGGATATCGTGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 7:700648/135‑1 (MQ=255)
ataaTTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 1:117727/135‑1 (MQ=255)
agcATTACCACGACTCCAGGGTAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 3:484318/136‑1 (MQ=255)
aTCTTTACCACGACTCCAGGGACGAGCCGAATTCGGCATTATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCTTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 6:399937/140‑1 (MQ=255)
aTCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 7:456728/140‑1 (MQ=255)
aTCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 6:564737/140‑1 (MQ=255)
aTCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 4:497423/138‑1 (MQ=255)
aTCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 6:104758/140‑1 (MQ=255)
aTCATTAACACGACTCCAGGGAAGAGCCGAATTCGGAAATATTATTGTCATTGTATGAAGGATATCTGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 2:973/138‑1 (MQ=255)
aTCAATAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 4:923434/138‑1 (MQ=255)
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CTCTGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGC‑TTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATC > NZ_CP022686/2460441‑2460714
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
