Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F36 I0 R1
|
149 |
10545.8 |
7272710 |
98.3% |
7149073 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,460,579 |
T→A |
25.5% |
intergenic (‑1/‑157) |
yhjY ← / → tag |
autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,460,579 | 0 | T | A | 25.5%
| 262.4
/ 31.4
| 151 | intergenic (‑1/‑157) | yhjY/tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| Reads supporting (aligned to +/- strand): ref base T (80/30); new base A (2/38); total (83/68) |
| Fisher's exact test for biased strand distribution p-value = 1.37e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 151 total aligned reads displayed.
TGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACG > NZ_CP022686/2460444‑2460711
|
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACAACCGCTTTTTTTTATGATCATTAaca > 5:574555/1‑140 (MQ=255)
ggggAATGTCCGGGTTGCGTATAAACGATATATTCTTGTTGCCAGGCTTAAGCTGTGTTTAAAAAAACGGCCCTGATTACCCCCGCCGCAATCTGGCTTCGCGGCCAGCTACCACCGCTTTTTTTTATTATCATTAac < 8:710458/136‑1 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 7:614243/1‑138 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 7:153284/1‑138 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTGGAGAAAAAAGGCTCTGATTACCACGCTCGCAAGCACGCTTAGCTGCCAGCGACCACCGGTTTGTATTATGCTCAATAaca > 7:733375/1‑138 (MQ=255)
tgGAATGTCCGCCTTGCGTATCAACGATATATTCATGTTTCCAGGCGTAAGAAGTGTTGAGAAAAAAGGCACTGATTCCCACGCTCGCACGCAGGCTTAGCTGCCAGCGCCCACCGCTGATTTTAATGATCATAAaca > 7:80881/1‑138 (MQ=255)
gAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACg > 1:131580/1‑138 (MQ=255)
gAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACg > 1:131578/1‑138 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACt > 2:35318/1‑138 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc > 6:197944/1‑140 (MQ=255)
tCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTTAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATGAACACGACTcc > 1:389088/1‑138 (MQ=255)
tCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGACTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc > 7:618499/1‑138 (MQ=255)
gggTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCACGCAGGCTTAGCTGCCAGCGACCACCGCTTTATTTTATGATCATAAACACGACTCCAgg > 4:887747/1‑138 (MQ=255)
gggTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 4:407296/1‑138 (MQ=255)
gTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGc > 3:760561/1‑138 (MQ=255)
tATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGa > 6:313384/1‑140 (MQ=255)
ataaaCGATATTTTCTTGTGGCCTGGGGTACGGGGTTTTTATAAAAAATGCCCTGATACCCACGCTGCCAATCTGGTTTAGCTTCCTGCTACCACCGCTTTTTTTTTTTATAATAAACACGACTCCAGGGAAGAGCCg < 8:532432/135‑1 (MQ=255)
aaaCTATATATTGTTGTTGCCCGGCGTAAGCGTGGTTCATAAAAACGCCACTCATACCCCCGCCCGCACGCCGGCTTAGCTCCCAGCGCCCCCCGCTTTTTTTTATGAAAATTACCACGACTCCAGGGAAGAGCCGaa < 4:609282/137‑1 (MQ=255)
ctttatttTATTGTTGCCAGGCGTATGCGGTGTTTATAAAAAAGGCAATGATTCCCACGCTCGAATGCCTGCTTCGCCCCCCGCGACCCCCGATTTTTTTAATTATAATAAACACGACTCCAGGGAAGAGCCGAATTc < 8:355894/135‑1 (MQ=255)
cGATATATTCTTGTTGCCAGGCGTACGCGGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACCCCAGGGAAGAGCCGAATTc < 7:151978/138‑1 (MQ=255)
ttttatTCTTGTGGCCAGGCGTACGCGGTGTTGACAAAAACGCCACTTATAACCCCGCTCGCACCCTGGCTTAGCGGCCCGCCACCACCGTTTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCgg < 2:131580/135‑1 (MQ=255)
ttatatTCTTGGGGCCAGGCGTAAGCGGTGTTGAAAAAAACGGCACTTATACCCCCGCGCGCACCCTGGCTATGGCCCCCGCCACCCCCTTTTTTTTTTTTTATAATACACACGACTCCAGGGAAGAGCCGAATTCgg < 2:131578/137‑1 (MQ=255)
atttatTGTTGTTGCAAGGCTTAATCTGTGTTTACAAAAAATCCATTGATTACCACGCTCGCAAGCATGTTTTGCTGCCAGCTACCCCCGCTTTTTTTAATCATAATTACCACGACTCCAGGGAAGAGCCGAATTCgg < 4:712395/135‑1 (MQ=255)
atatTCTTGTTGCCAGGCGGAACCTCTGTTGAGAAAAAAGGCACTGATTTCCACGCTCGCAAGCAGGCTGAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCa > 3:157451/1‑138 (MQ=255)
tttgtggttcCCCGGCTTATGCTGGGGTGATAAAAACGCCCTTGATTACCCCCCGCGCAAGCCGGCTTCGCGGCCCGCGACCCCCGTTTTTTTTAATCTACAAAACCACGACTCCAGGGAAGAGCCGAATTCGGCAat < 2:297591/132‑1 (MQ=255)
tCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAACGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGCCCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGACGAATTCGGCAAtatta > 6:229862/1‑140 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAATAGCCGAATTCGGCAATATTATTGta > 6:609259/1‑139 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGGAATATTATTg > 2:772310/1‑138 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTg > 2:798574/1‑138 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 6:101793/1‑140 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCAATAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTg > 8:781932/1‑138 (MQ=255)
tgCCAGGCGTACGCTGTGTTGACAAAAACGCCACTTATAACCCCGCTCGCCACCAGGCTTCGCGGCCAGCGACCACCGCTTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATACTATTGt < 4:535295/138‑1 (MQ=255)
tgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGt > 2:2480/1‑138 (MQ=255)
gCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 8:618330/1‑138 (MQ=255)
ccAGGGGTACGGGGTGTTTATAAAAAAGCCACTTATAACCACGAGCGCTATCCGGCTTAGCTCCCAGCTACAACGGATTTTTTTTATTATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAtt < 6:247381/140‑1 (MQ=255)
tacgCTGTGTTGAGAAAAACGGCACTGATTCCCCCGCGCGCCACCAGGCTTCGCGGCCCGCGCCCCCGGCTTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATg < 8:634373/135‑1 (MQ=255)
cTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTTTCATTGTATGAAgg > 4:365647/1‑138 (MQ=255)
tgtgTTGTTAAAAATGTCACTTATTACCACGATGGAAACCCTTCTAAGCTGCCAGCCACCCCCGTTTTTTTTTATTAAAATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 4:522655/138‑1 (MQ=255)
ggtgtTGACAAAATATGCTCTGATTACCCCGGGCCAACGCTGGATTGGCGGCGAGGCCCCACGTCTTTTTTATATGATCAATCCCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 4:305841/137‑1 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 5:753541/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGACGAATTCGGCAATATTATTGTCATTTTATGAAGTatata > 6:79573/1‑139 (MQ=255)
ttGAGCAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCCTGGAAGAGCCGAATACGGCAATATTATAGTCAATGTATGAAGGATATc > 8:677757/1‑138 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACCCGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 8:238487/1‑138 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGatata > 8:817330/1‑137 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGatata > 2:266875/1‑137 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 2:358085/1‑138 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 4:270022/1‑138 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTAGGCAATATTATTGTCATTGTATGAAGGATATc > 4:59516/1‑138 (MQ=255)
ttataaaaatGCCAATGATTACCACGCTCGCCAGCTGGTTTTGCTGCCAGCTACCACCTTTTTTTTTTTTTATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 4:101771/134‑1 (MQ=255)
tcacaaaaacGGCCCGTATCACCACGCTCCAATGCTGGCTTCGCTGCAAGCGACCACCCATTTTTTTTTTGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 8:440246/134‑1 (MQ=255)
tGATAAAAACGCCTCTTATTCCCCCGCCCGAAAGCTGGATTAGCTGCCAGCGACCCCCGCTTTTTTTAATTATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGGCATTGTATGAAGGATATCg < 8:611631/138‑1 (MQ=255)
tGAGAAAAAAGTCTCTGATTCCCCCGTTCGCAAGCTGGGTTCGCGCCCAGGGACAACGTATTTTTTTTATGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 4:359977/138‑1 (MQ=255)
tGAGAAAAAAGGCACTGATAACCACGCTCGCAAGCCGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 4:672283/138‑1 (MQ=255)
tGACAAATACGGCACTGATTCCCACGCACCCCTGCAGGATTCGGTGCCGGCTACCACCCGTTTTTTTTATCACCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 8:525581/138‑1 (MQ=255)
tGACAAAACAGGCACGTATTCCCCCGCTCGCATCCAGGCTTAGCTGCCAGCGACCCCCGCTTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 2:81905/138‑1 (MQ=255)
aaaaaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCa > 7:724376/1‑138 (MQ=255)
aaaaaGGCACTTATTACCACGCTCCCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATTATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAt < 4:482126/138‑1 (MQ=255)
aaaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta > 4:37890/1‑138 (MQ=255)
aGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGc > 5:272605/1‑140 (MQ=255)
ggCACTTATAACCACGCTCTCATGCCGGCTTAGCTGCCCGCGACCACGGATTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 8:588111/138‑1 (MQ=255)
ggCACTGATTACCCCGCCCCCAAGCAGGCTTAGCGGCCAGGTACCACCTATTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 2:515487/138‑1 (MQ=255)
gccattGATTCCCACCCTCCCAAGCTGGCTAATCGGCCAGCCACCACCTTTTTTTTTTATAATATTTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 1:696275/133‑1 (MQ=255)
gccACTGATAACCCCGCTCGCAAGCTGGCTTCGCTGCCAGCCACCCCCGATTTTTTTTTTGATCATACACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 5:197944/138‑1 (MQ=255)
gccACTGATAACCACGCGCCCACGCTGGATTAGCTGCCAGCTACCCCCGCTTTTTTTTATCATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 1:262730/136‑1 (MQ=255)
gccACTCATCACCCCGCTCGCACGCTGGCTTAGCGCCCCGCGCCCACCGATTTTTTTTATGATAAAAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 1:335199/136‑1 (MQ=255)
gcacatGATTACCCCGCTCGCACGCTGTTTTCGCGGCCAGCGACCACCGTTTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 8:33083/133‑1 (MQ=255)
cgCACTGATAACAACTCTCCCAAGATGGTTTTGCTGCCAGCTACCAACTCTTTTTTTTTTTATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 4:839056/137‑1 (MQ=255)
cACTTATTCCCCGGCTCGCACGCTGGGTTAGCTGCCAGCGACCACCGGTTTTTTTTTTGATCATACCCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 4:260688/138‑1 (MQ=255)
tataaCCACGCTCGCACTCAGGCTATGCTGCCAGCGACCCCCGTTTTTTTTTATTATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGt < 3:580803/134‑1 (MQ=255)
ataaCCCCGCCCCCACGCAGGCTTAGCTCCCAGCCACCCCCGCTTTTTTTAATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTa < 2:910643/135‑1 (MQ=255)
aTTCCCTCGCTCGCAAGCTGGATTAGCTCTAAGCCACCACCTATTTTTTTTTTGTACATTACCACGTCTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGACGGATATCGGGCATAGTAGCCCTGTa < 4:62626/138‑1 (MQ=255)
ttACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTAt > 8:240996/1‑138 (MQ=255)
ttACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCATGTAt > 4:186070/1‑138 (MQ=255)
aCGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAat > 1:303624/1‑138 (MQ=255)
cccTCGCACGCTGGCTTAGCGCCCAGCGACCACCGGTTTTTTTTATTATAATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAata < 3:341630/136‑1 (MQ=255)
cccTCCCACGCAGGCTTAGCTCCCACCGACCCCCGCTTTTTTTAATGAAAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAata < 1:482039/136‑1 (MQ=255)
gCTCGCAAGCAGGCTTAGCTGCCAGCGCCCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTCGCCCTGTATTAAATATTg > 6:801358/1‑140 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTg > 3:87631/1‑138 (MQ=255)
gcgaaaGCAGGATTGGCTGCCCGCAACCACTTTTTTTTTTTATTATCTATACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTg < 7:305121/134‑1 (MQ=255)
gCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGAc > 4:573781/1‑138 (MQ=255)
gCTTAGCTGCCAGCGACCACCGCTGATTTTTATGAACATTAACACGACGCCAGGGAATAGCCGAATTCGGCAAAATTTATGTCATTGTATGAAGGATATCGGGCATAGTAGCCCAGTATTTAATATTGACTTTTTCACCg > 5:846168/1‑140 (MQ=255)
ttcgcggCCACCGACCCCCGCTTTTTTTTTTCATCTTTACCACGACTCCAGCGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCg < 7:267671/132‑1 (MQ=255)
ttAGCTTCCAGCGACCCCCGCTTTTTTTTTTTATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTTTGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCg < 4:638074/138‑1 (MQ=255)
ttAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTAGGCAATATTATTGTCATTGTATTAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGAt > 5:567587/1‑140 (MQ=255)
aGCTGCCAGCGACCACCGCTTTTGTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGc > 6:87272/1‑140 (MQ=255)
cTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGc > 7:81796/1‑138 (MQ=255)
gCCAGCGACCACCGC‑TTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATGAAATATTGACTTTTTCACCGATGCGTc > 2:290805/1‑138 (MQ=255)
cAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAg > 6:577836/1‑140 (MQ=255)
cAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAg > 5:24555/1‑140 (MQ=255)
tcGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGCGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAg > 4:265945/2‑138 (MQ=255)
caccGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAg > 8:411154/1‑138 (MQ=255)
ccGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATAATATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCATGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGc > 5:618647/1‑140 (MQ=255)
ttttttttttTACATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTg < 5:864618/138‑1 (MQ=255)
ttttataaTTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACATATTCTTCAAGAAAAGCGGCTGAAATTTTTa < 6:884272/133‑1 (MQ=255)
tATGATCATTATCACGTGTCGTGTGAATAGGCGAATTCGGCAATATTATTGTGATTGTATGATGGATATCGGGCATAGTAGGCCTGTATTATTTATTGACTTTTTCTCCGATGCGTCAAGAAAAGCGGCTGAAATTTTTa < 6:497130/140‑1 (MQ=255)
ttataaTTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTa < 3:663133/133‑1 (MQ=255)
ttaTCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTa < 2:491779/136‑1 (MQ=255)
tGATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTa < 8:773025/138‑1 (MQ=255)
aTCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 3:445146/138‑1 (MQ=255)
aTCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 3:3925/138‑1 (MQ=255)
|
TGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACG > NZ_CP022686/2460444‑2460711
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
