Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
404 |
265.1 |
10478538 |
96.8% |
10143224 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
1,901,507 |
Δ2,603 bp |
|
[RPPX_08485]–RPPX_08495 |
[RPPX_08485], RPPX_08490, RPPX_08495 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
1901507–1904102 |
1904109 |
8–2603 |
277 [0] |
[0] 273 |
[RPPX_08485]–RPPX_08495 |
[RPPX_08485],RPPX_08490,RPPX_08495 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 1901506 | 0 (0.000) | 265 (1.060) |
158/286 |
0.2 |
100% |
coding (409/426 nt) |
RPPX_08485 |
hypothetical protein |
| ? | CP009974 |
1904110 = |
0 (0.000) | intergenic (+113/‑1737) |
RPPX_08495/RPPX_08505 |
ATPase AAA/hemolysin secretion protein D |
GATK/CNVnator alignment
N/A
