Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F368 I0 R1 1472 214.4 7116750 95.9% 6824963 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,540,399 A→G 32.1% intergenic (‑114/+146) yddL ← / ← yddG putative lipoprotein;putative membrane; Not classified; putative outer membrane porin protein/aromatic amino acid exporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,540,3990AG32.1% 319.3 / 233.2 239intergenic (‑114/+146)yddL/yddGputative lipoprotein;putative membrane; Not classified; putative outer membrane porin protein/aromatic amino acid exporter
Reads supporting (aligned to +/- strand):  ref base A (67/95);  new base G (35/41);  total (103/136)
Fisher's exact test for biased strand distribution p-value = 5.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 255 total aligned reads displayed.

CAGTTACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGTTATT  >  CP009273/1540252‑1540544
                                                                                                                                                   |                                                                                                                                                 
cAGTTACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATgaga                                                                                                                                                   <  2:3284457/148‑1 (MQ=255)
cAGTTACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATgaga                                                                                                                                                   >  2:1080272/1‑148 (MQ=255)
   ttACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACTTTTTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGgaaa                                                                                                                                                <  1:1503231/148‑1 (MQ=255)
   ttACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGaaaa                                                                                                                                                <  1:914689/148‑1 (MQ=255)
   ttACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGaaaa                                                                                                                                                <  1:886596/148‑1 (MQ=255)
    tACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGgaaaa                                                                                                                                               >  1:209402/1‑148 (MQ=255)
         ccaccGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGAt                                                                                                                                          <  2:573826/148‑1 (MQ=255)
          caccGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATg                                                                                                                                         <  1:657364/148‑1 (MQ=255)
              gCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAaat                                                                                                                                     >  1:838291/1‑148 (MQ=255)
                aaCTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAaataa                                                                                                                                   <  2:2034985/148‑1 (MQ=255)
                aaCTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAaataa                                                                                                                                   >  2:1268189/1‑148 (MQ=255)
                 aCTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAaataat                                                                                                                                  >  1:2704533/1‑148 (MQ=255)
                  cTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAataata                                                                                                                                 >  1:1071157/1‑148 (MQ=255)
                    aTTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGTCATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAAtatt                                                                                                                               >  1:3103325/1‑148 (MQ=255)
                    aTTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAANATAGATGAAATAAtatt                                                                                                                               <  2:2676047/148‑1 (MQ=255)
                      ttttAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAAtattat                                                                                                                             <  2:917890/148‑1 (MQ=255)
                      ttttAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAAtattat                                                                                                                             >  1:2351547/1‑148 (MQ=255)
                         tAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATAttattta                                                                                                                          <  1:3055981/148‑1 (MQ=255)
                         tAATTTCATTTAAAAGAATCCTTTTAATTATCTTTAAACTTATTTTCTAAACGAATTTTAAACGTCTTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAAAAATGAGAAAAATAGATGAAATAATAttattta                                                                                                                          <  2:2666144/148‑1 (MQ=255)
                            tttCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCg                                                                                                                       <  1:3258756/148‑1 (MQ=255)
                                aTTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGatat                                                                                                                   <  2:2934353/148‑1 (MQ=255)
                                  ttAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATAtgt                                                                                                                 >  2:2877403/1‑148 (MQ=255)
                                  ttAACAGAATCCTTATAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATAtgt                                                                                                                 <  1:2083907/148‑1 (MQ=255)
                                   tAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATAtgtg                                                                                                                <  1:1584988/148‑1 (MQ=255)
                                    aaCAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGa                                                                                                               <  1:2864185/148‑1 (MQ=255)
                                     aCAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGAt                                                                                                              <  2:2824199/148‑1 (MQ=255)
                                     aCAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGAt                                                                                                              <  2:793360/148‑1 (MQ=255)
                                          aTCCTTTTAATTATCGTTAAACGTATTTTCTAAACTAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAg                                                                                                         <  2:622411/148‑1 (MQ=255)
                                          aTCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAg                                                                                                         <  2:2234924/148‑1 (MQ=255)
                                          aTCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAg                                                                                                         >  2:1847916/1‑148 (MQ=255)
                                          aTCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAg                                                                                                         >  2:2298186/1‑148 (MQ=255)
                                          aTCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAg                                                                                                         >  2:249796/1‑148 (MQ=255)
                                           tCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGt                                                                                                        >  2:1960583/1‑148 (MQ=255)
                                            ccTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTc                                                                                                       >  1:1277742/1‑148 (MQ=255)
                                            ccTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTc                                                                                                       >  1:267562/1‑148 (MQ=255)
                                             cTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCg                                                                                                      <  2:1613054/148‑1 (MQ=255)
                                                ttAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGaaa                                                                                                   <  1:523873/148‑1 (MQ=255)
                                                 tAATGAACGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAAt                                                                                                  <  1:1858791/148‑1 (MQ=255)
                                                    ttATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATgag                                                                                               >  2:1375517/1‑148 (MQ=255)
                                                          ttAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATaa                                                                                         >  2:1343745/1‑148 (MQ=255)
                                                           tAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAg                                                                                        >  1:591056/1‑148 (MQ=255)
                                                                gTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGaa                                                                                   <  1:3441609/148‑1 (MQ=255)
                                                                  aTTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAAtt                                                                                 <  2:1506676/148‑1 (MQ=255)
                                                                      tCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTg                                                                             >  2:685531/1‑148 (MQ=255)
                                                                      tCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTg                                                                             >  1:2796730/1‑148 (MQ=255)
                                                                       cTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTgg                                                                            <  1:1330137/148‑1 (MQ=255)
                                                                           aCGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTAtt                                                                        >  2:1130949/1‑148 (MQ=255)
                                                                              aaTTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGa                                                                     <  2:121112/148‑1 (MQ=255)
                                                                              aaTTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGa                                                                     <  1:2298186/148‑1 (MQ=255)
                                                                              aaTTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGa                                                                     <  1:249796/148‑1 (MQ=255)
                                                                               aTTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGaa                                                                    >  2:3481774/1‑148 (MQ=255)
                                                                                ttttAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGaaa                                                                   <  1:1813791/148‑1 (MQ=255)
                                                                                 tttAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAat                                                                  <  2:2066420/148‑1 (MQ=255)
                                                                                 tttAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAat                                                                  <  2:1847232/148‑1 (MQ=255)
                                                                                 tttAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAat                                                                  >  1:1334144/1‑148 (MQ=255)
                                                                                     aaCGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATCTAAGGTGAATTACTGGTATTTGAAatttat                                                              >  2:2132896/1‑148 (MQ=255)
                                                                                     aaCGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAatttat                                                              <  1:1459823/148‑1 (MQ=255)
                                                                                     aaCGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAatttat                                                              <  2:1554431/148‑1 (MQ=255)
                                                                                      aCGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAatttatt                                                             <  1:2901136/148‑1 (MQ=255)
                                                                                       cgtcGTCATTTATAAATGACATAATGTTTTTAAAATATAATGTTGATTAAAAACATTGAGGAAAATAGATTAAATAATATTTTTTATAGATATGTTATCTAAGTCGAAATGAGATATAAGGTTAATTACTGGTATTTGAAatttattt                                                            <  2:3458900/145‑1 (MQ=255)
                                                                                         gCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTAttttt                                                          <  2:1241460/148‑1 (MQ=255)
                                                                                            tCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTa                                                       <  1:102920/148‑1 (MQ=255)
                                                                                              aTTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGTCTTACTGGTCTTTGAAATTTATTTTTTTatt                                                     >  2:3316412/1‑146 (MQ=255)
                                                                                               tttATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAata                                                    <  2:310511/148‑1 (MQ=255)
                                                                                               tttATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAata                                                    <  1:988608/148‑1 (MQ=255)
                                                                                                ttATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAatat                                                   <  1:2043017/148‑1 (MQ=255)
                                                                                                  ataAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTg                                                 <  2:2520720/148‑1 (MQ=255)
                                                                                                       tGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGa                                            <  1:3334995/148‑1 (MQ=255)
                                                                                                         aCATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAAt                                          >  2:81247/1‑148 (MQ=255)
                                                                                                         aCATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAAt                                          <  2:760826/148‑1 (MQ=255)
                                                                                                         aCATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAAt                                          >  1:758836/1‑148 (MQ=255)
                                                                                                           aTACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAAttt                                        <  1:2177930/148‑1 (MQ=255)
                                                                                                            tACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTa                                       <  2:2797892/148‑1 (MQ=255)
                                                                                                             aCTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTAt                                      >  2:590058/1‑148 (MQ=255)
                                                                                                             aCTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTAt                                      >  1:1708098/1‑148 (MQ=255)
                                                                                                             aCTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTAt                                      >  1:1214963/1‑148 (MQ=255)
                                                                                                              cTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATc                                     <  2:758816/148‑1 (MQ=255)
                                                                                                               tGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCt                                    >  2:2951283/1‑148 (MQ=255)
                                                                                                                  ttttAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGAt                                 >  1:373684/1‑148 (MQ=255)
                                                                                                                    ttAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTa                               <  1:3286625/148‑1 (MQ=255)
                                                                                                                     tAAAATAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTaa                              <  2:3181859/148‑1 (MQ=255)
                                                                                                                       aaaTAGAATGGTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACt                            <  1:2533668/148‑1 (MQ=255)
                                                                                                                         aTAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTAc                          >  2:2165447/1‑148 (MQ=255)
                                                                                                                          tAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTAcc                         <  2:1041174/148‑1 (MQ=255)
                                                                                                                           aGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCg                        <  1:190320/148‑1 (MQ=255)
                                                                                                                             aaTGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCggg                      <  2:439720/148‑1 (MQ=255)
                                                                                                                             aaTGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCggg                      <  2:234702/148‑1 (MQ=255)
                                                                                                                                ggTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCg                   <  1:2738215/148‑1 (MQ=255)
                                                                                                                                 gTGATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGt                  >  1:3374626/1‑148 (MQ=255)
                                                                                                                                 gTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGATATTTATTTTTTTAATATTGTCGGAATTTATCTGATTATCTACCGGGCCGt                  >  2:3468456/1‑148 (MQ=255)
                                                                                                                                   gATTAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGACGTAg                >  1:3134115/1‑148 (MQ=255)
                                                                                                                                      tAAAAACAATGAGGAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGAcc             <  2:412332/148‑1 (MQ=255)
                                                                                                                                            cAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAg       >  1:2218582/1‑148 (MQ=255)
                                                                                                                                              aTGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGtt     >  2:371876/1‑148 (MQ=255)
                                                                                                                                              aTGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGtt     >  2:2202719/1‑148 (MQ=255)
                                                                                                                                               tGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGTTa    >  2:3237862/1‑148 (MQ=255)
                                                                                                                                               tGAGAAAAATAGATGAAATAATATTATTTATCAATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGTTa    >  1:2808531/1‑148 (MQ=255)
                                                                                                                                               tGACAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGTTa    <  1:2513977/148‑1 (MQ=255)
                                                                                                                                                 agaAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGTTAtt  >  2:1508896/1‑148 (MQ=255)
                                                                                                                                                 agaAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGTTAtt  >  2:173574/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
CAGTTACAACCACCGCAACTATTTTTAATTTCATTTAACAGAATCCTTTTAATTATCGTTAAACGTATTTTCTAAACGAATTTTAAACGGCGTCATTTATAAATGACATACTGTTTTTAAAATAGAATGGTGATTAAAAACAATGAGAAAAATAGATGAAATAATATTATTTATCGATATGTGATCGAAGTCGAAATGAGATATAAGGTGAATTACTGGTATTTGAAATTTATTTTTTTAATATTGTCGGAATTTATCTGATTAACTACCGGGCCGTAGACCCGGCAGTTATT  >  CP009273/1540252‑1540544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A