mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 146 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,434,438 | 0 | T | C | 72.7% | 24.3 / 15.5 | 22 | E216G (GAA→GGA) | fabB | beta‑ketoacyl‑ACP synthase I |
| * | NZ_CP009273 | 90,688 | 0 | T | C | 70.4% | 32.5 / 21.6 | 27 | F346L (TTC→CTC) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| * | NZ_CP009273 | 2,544,265 | 0 | A | T | 70.0% | 28.8 / 17.0 | 20 | I104N (ATC→AAC) | yfeY | RpoE‑regulated lipoprotein |
| * | NZ_CP009273 | 1,575,074 | 0 | A | G | 68.2% | 21.6 / 18.8 | 22 | intergenic (‑27/+25) | ydeM/ydeN | anaerobic sulfatase maturase/sulfatase |
| * | NZ_CP009273 | 1,476,395 | 0 | A | G | 67.6% | 45.0 / 31.3 | 37 | R418R (AGA→AGG) | ynbD | phosphatase PAP2/dual specificity phosphatase family protein |
| * | NZ_CP009273 | 1,994,358 | 0 | A | G | 65.5% | 28.9 / 25.4 | 29 | S50P (TCC→CCC) | fliZ | flagella biosynthesis regulatory protein FliZ |
| * | NZ_CP009273 | 1,433,342 | 0 | A | G | 65.2% | 22.0 / 21.9 | 23 | F567S (TTC→TCC) | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| * | NZ_CP009273 | 2,940,921 | 0 | C | . | 64.0% | 19.9 / 34.3 | 25 | noncoding (66/77 nt) | BW25113_RS14640 | tRNA‑Met |
| * | NZ_CP009273 | 1,826,720 | 0 | C | A | 63.0% | 24.8 / 30.1 | 27 | R12R (CGC→CGA) | xthA | exodeoxyribonuclease III |
| * | NZ_CP009273 | 3,680,730 | 0 | A | G | 62.7% | 35.8 / 60.6 | 51 | S602P (TCC→CCC) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 3,584,706 | 0 | A | G | 62.5% | 12.4 / 24.8 | 24 | F327S (TTC→TCC) | ugpB | sn‑glycerol‑3‑phosphate ABC transporter substrate‑binding protein UgpB |
| * | NZ_CP009273 | 593,539 | 0 | A | . | 62.1% | 15.8 / 44.8 | 29 | coding (605/1224 nt) | cusB | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB |
| * | NZ_CP009273 | 2,269,175 | 0 | A | T | 61.9% | 7.3 / 22.6 | 21 | I142F (ATC→TTC) | yejE | ABC transporter permease |
| * | NZ_CP009273 | 3,376,030 | 0 | A | G | 61.5% | 14.3 / 27.3 | 26 | I158V (ATC→GTC) | degS | outer membrane‑stress sensor serine endopeptidase DegS |
| * | NZ_CP009273 | 1,322,413 | 0 | T | G | 60.0% | 7.1 / 13.8 | 15 | T68P (ACC→CCC) | cobO | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
| * | NZ_CP009273 | 2,778,556 | 0 | A | . | 60.0% | ‑3.2 / 15.7 | 10 | intergenic (‑186/+565) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 2,121,860 | 0 | A | G | 59.1% | 4.0 / 27.2 | 22 | N170N (AAT→AAC) | wcaF | colanic acid biosynthesis acetyltransferase WcaF |
| * | NZ_CP009273 | 49,899 | 0 | C | T | 57.1% | 22.9 / 52.0 | 42 | A26V (GCC→GTC) | folA | type 3 dihydrofolate reductase |
| * | NZ_CP009273 | 1,238,476 | 0 | G | A | 57.1% | 5.1 / 12.9 | 14 | R21C (CGT→TGT) | ldcA | muramoyltetrapeptide carboxypeptidase |
| * | NZ_CP009273 | 1,976,004 | 0 | A | G | 57.1% | 2.2 / 14.0 | 15 | intergenic (‑136/+31) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |