mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 26 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 822,963 | 0 | T | G | 58.3% | 0.2 / 10.8 | 12 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 4,213,521 | 0 | T | G | 58.3% | 7.1 / 11.6 | 12 | K12N (AAA→AAC) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 57.9% | 13.8 / 19.0 | 19 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 3,176,035 | 0 | A | G | 57.1% | 6.5 / 15.2 | 14 | I43V (ATC→GTC) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 2,297,151 | 0 | C | A | 55.6% | 2.5 / 12.4 | 9 | R23R (CGG→AGG) | BW25113_RS25870 | hypothetical protein |
| * | NZ_CP009273 | 497,020 | 0 | A | C | 54.5% | 2.2 / 11.0 | 11 | *559E (TAA→GAA) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 2,360,464 | 0 | G | T | 54.5% | 9.3 / 17.1 | 11 | C353F (TGT→TTT) | arnB | UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase |
| * | NZ_CP009273 | 3,085,146 | 0 | A | C | 54.5% | 8.9 / 11.1 | 11 | G218G (GGA→GGC) | rsmE | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
| * | NZ_CP009273 | 3,085,153 | 0 | G | T | 54.5% | 6.5 / 16.1 | 11 | V221F (GTT→TTT) | rsmE | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
| * | NZ_CP009273 | 4,091,435 | 0 | T | G | 54.5% | 10.0 / 11.8 | 11 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 4,186,009 | 0 | T | G | 54.5% | 19.9 / 26.2 | 22 | T7P (ACC→CCC) | thiC | phosphomethylpyrimidine synthase ThiC |
| * | NZ_CP009273 | 4,464,532 | 0 | T | G | 54.5% | 14.8 / 17.7 | 24 | *198G (TGA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |
| * | NZ_CP009273 | 353,586 | 0 | A | T | 53.8% | ‑5.5 / 10.2 | 13 | N272K (AAT→AAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 822,410 | 0 | A | T | 53.8% | 5.8 / 16.0 | 13 | I100N (ATT→AAT) | ybhS | ABC transporter permease |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 53.8% | 7.2 / 14.2 | 13 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 53.8% | 11.0 / 12.4 | 13 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 53.8% | ‑2.8 / 11.5 | 13 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 53.8% | 13.2 / 14.7 | 13 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 3,806,432 | 0 | A | C | 53.8% | 6.7 / 11.5 | 13 | T114T (ACA→ACC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 4,086,494 | 0 | T | G | 53.8% | 3.8 / 10.8 | 13 | Y102S (TAC→TCC) | rhaM | L‑rhamnose mutarotase |