mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 35 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 63.3% | ‑3.4 / 26.6 | 30 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 63.3% | ‑5.0 / 26.9 | 30 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 62.5% | 2.5 / 11.2 | 16 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 62.5% | 1.0 / 10.8 | 16 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 61.5% | 3.6 / 21.0 | 26 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 4,476,393 | 0 | C | G | 61.5% | 3.1 / 13.1 | 13 | A120G (GCG→GGG) | lptF | LPS export ABC transporter permease LptF |
| * | NZ_CP009273 | 1,679,006 | 0 | A | C | 58.3% | 4.2 / 11.9 | 12 | D164A (GAC→GCC) | tus | DNA replication terminus site‑binding protein |
| * | NZ_CP009273 | 2,336,778 | 0 | T | A | 56.2% | 8.3 / 19.6 | 16 | M291L (ATG→TTG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 56.2% | 12.4 / 20.1 | 16 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 1,377,979 | 0 | G | A | 54.5% | ‑1.4 / 10.2 | 11 | F80F (TTC→TTT) | ycjW | LacI family DNA‑binding transcriptional regulator |
| * | NZ_CP009273 | 1,377,991 | 0 | A | C | 54.5% | 8.0 / 12.2 | 11 | G76G (GGT→GGG) | ycjW | LacI family DNA‑binding transcriptional regulator |
| * | NZ_CP009273 | 2,778,686 | 0 | T | G | 54.5% | 20.3 / 28.2 | 22 | intergenic (‑316/+435) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 4,224,171 | 0 | A | C | 54.5% | 14.3 / 29.4 | 22 | P162P (CCA→CCC) | pgi | glucose‑6‑phosphate isomerase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 53.8% | 9.7 / 15.5 | 13 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,213,865 | 0 | G | T | 53.8% | 0.6 / 15.3 | 13 | S361I (AGT→ATT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 2,678,659 | 0 | A | C | 53.8% | 11.5 / 15.3 | 13 | Y70D (TAT→GAT) | glyA | serine hydroxymethyltransferase |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 53.3% | 7.0 / 16.2 | 15 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 53.3% | 7.9 / 13.1 | 15 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 1,906,036 | 0 | C | T | 53.3% | 1.1 / 12.1 | 15 | S266S (TCG→TCA) | htpX | protease HtpX |
| * | NZ_CP009273 | 2,336,782 | 0 | G | C | 53.3% | 12.1 / 19.2 | 15 | G289G (GGC→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |