mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 28 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,832,718 | 0 | T | G | 68.4% | 6.9 / 13.5 | 19 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| * | NZ_CP009273 | 3,578,446 | 0 | A | C | 64.3% | 0.7 / 11.8 | 14 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltransferase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 61.5% | 4.2 / 11.6 | 13 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,348,816 | 0 | A | C | 60.9% | 21.4 / 25.8 | 23 | T245P (ACC→CCC) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 60.0% | 7.1 / 14.3 | 15 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 60.0% | 3.1 / 15.1 | 15 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 58.1% | 13.7 / 56.7 | 44 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,578,438 | 0 | A | C | 57.1% | 7.7 / 13.0 | 14 | intergenic (+35/+3) | yrhB/ggt | YrhB family protein/gamma‑glutamyltransferase |
| * | NZ_CP009273 | 296,402 | 0 | T | G | 56.2% | 6.6 / 13.1 | 16 | T82P (ACC→CCC) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | NZ_CP009273 | 2,994,523 | 0 | A | C | 56.2% | 6.7 / 20.2 | 16 | T287P (ACC→CCC) | xdhA | xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| * | NZ_CP009273 | 684,970 | 0 | A | C | 54.5% | 6.4 / 12.0 | 11 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NZ_CP009273 | 1,009,479 | 0 | T | G | 54.5% | 7.6 / 12.7 | 11 | G255G (GGT→GGG) | pqiB | intermembrane transport protein PqiB |
| * | NZ_CP009273 | 3,964,457 | 0 | T | G | 54.5% | 6.3 / 13.0 | 11 | V322G (GTG→GGG) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
| * | NZ_CP009273 | 339,155 | 0 | A | G | 53.8% | 5.5 / 15.6 | 13 | G187G (GGA→GGG) | yahK | NADPH‑dependent aldehyde reductase YahK |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 53.8% | 12.7 / 15.3 | 13 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 807,177 | 0 | T | G | 53.8% | 10.3 / 16.4 | 13 | V67G (GTG→GGG) | bioC | malonyl‑ACP O‑methyltransferase BioC |
| * | NZ_CP009273 | 1,152,745 | 0 | A | G | 53.8% | 6.1 / 11.4 | 14 | G171G (GGA→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 53.8% | 5.4 / 18.9 | 13 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,102,356 | 0 | T | G | 53.8% | 7.3 / 12.9 | 13 | G38G (GGT→GGG) | yiiR | DUF805 domain‑containing protein |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 53.3% | 8.7 / 16.4 | 15 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |