mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 223 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 64.7% | ‑3.5 / 35.0 | 34 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 63.3% | ‑0.3 / 79.7 | 79 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 62.0% | 1.2 / 84.6 | 79 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 61.3% | 4.3 / 33.1 | 31 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,213,870 | 0 | A | C | 60.7% | 24.3 / 28.7 | 28 | T363P (ACC→CCC) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 58.3% | 38.7 / 60.4 | 48 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 58.3% | 29.7 / 43.5 | 37 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 57.5% | 4.0 / 59.1 | 48 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 57.5% | 21.4 / 62.8 | 47 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 5,159 | 0 | G | A | 56.6% | 19.7 / 73.5 | 53 | intergenic (+139/‑75) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 762,147 | 0 | C | A | 56.0% | ‑0.1 / 22.6 | 25 | L216L (CTC→CTA) | mngA | PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 54.2% | 39.4 / 98.9 | 72 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 2,149,203 | 0 | A | C | 53.8% | 6.9 / 14.8 | 13 | T154P (ACC→CCC) | mdtB | multidrug efflux RND transporter permease subunit MdtB |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 53.8% | 12.7 / 58.0 | 39 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 838,331 | 0 | A | C | 53.5% | 25.2 / 43.5 | 43 | T182P (ACC→CCC) | rlmF | 23S rRNA (adenine(1618)‑N(6))‑methyltransferase RlmF |
| * | NZ_CP009273 | 2,380,331 | 0 | T | G | 53.1% | 29.1 / 34.2 | 33 | intergenic (+21/‑82) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 52.9% | 125.7 / 200.7 | 121 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 52.5% | 45.3 / 74.9 | 59 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 3,029,116 | 0 | A | C | 52.3% | 44.4 / 67.7 | 44 | G175G (GGT→GGG) | prfB | peptide chain release factor 2 |
| * | NZ_CP009273 | 3,941,183 | 0 | T | G | 52.3% | 52.8 / 68.3 | 44 | T49P (ACC→CCC) | hdfR | HTH‑type transcriptional regulator HdfR |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4532499 = | 21 (0.320) | 7 (0.120) | 7/150 | 3.1 | 16.3% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 53 (0.900) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 20 (0.300) | 4 (0.070) | 4/150 | 4.1 | 10.1% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 53 (0.900) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | 3920778 = | 79 (1.200) | 3 (0.050) | 3/144 | 4.4 | 4.4% | coding (264/993 nt) | asnA | aspartate‑‑ammonia ligase |
| ? | NZ_CP009273 | 3920817 = | 62 (1.090) | coding (303/993 nt) | asnA | aspartate‑‑ammonia ligase | |||||
| * | ? | NZ_CP009273 | = 4132002 | 56 (0.850) | 3 (0.050) | 3/150 | 4.5 | 5.4% | coding (148/2502 nt) | ptsP | phosphoenolpyruvate‑‑protein phosphotransferase |
| ? | NZ_CP009273 | = 4132014 | 56 (0.950) | coding (136/2502 nt) | ptsP | phosphoenolpyruvate‑‑protein phosphotransferase | |||||
| * | ? | NZ_CP009273 | 3995016 = | 82 (1.240) | 3 (0.050) | 3/150 | 4.5 | 4.0% | coding (231/951 nt) | corA | magnesium/cobalt transporter CorA |
| ? | NZ_CP009273 | = 3995012 | 71 (1.200) | coding (227/951 nt) | corA | magnesium/cobalt transporter CorA | |||||
| * | ? | NZ_CP009273 | 3613238 = | NA (NA) | 5 (0.080) | 3/150 | 4.5 | 100% | coding (687/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NZ_CP009273 | 3613252 = | 0 (0.000) | coding (701/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NZ_CP009273 | = 3035672 | 53 (0.800) | 3 (0.050) | 3/146 | 4.5 | 6.0% | intergenic (+20/+176) | ygfZ/yqfA | tRNA‑modifying protein YgfZ/hemolysin III family protein |
| ? | NZ_CP009273 | = 3035679 | 48 (0.840) | intergenic (+27/+169) | ygfZ/yqfA | tRNA‑modifying protein YgfZ/hemolysin III family protein | |||||
| * | ? | NZ_CP009273 | 3348958 = | 73 (1.100) | 3 (0.050) | 3/152 | 4.6 | 4.1% | coding (875/4461 nt) | gltB | glutamate synthase large subunit |
| ? | NZ_CP009273 | 3349010 = | 75 (1.250) | coding (927/4461 nt) | gltB | glutamate synthase large subunit | |||||
| * | ? | NZ_CP009273 | = 296733 | 201 (3.040) | 3 (0.050) | 3/156 | 4.7 | 1.7% | coding (866/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| ? | NZ_CP009273 | = 296760 | 155 (2.530) | coding (839/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB | |||||