mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 52 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 61.9% | 2.3 / 13.6 | 21 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 60.0% | 0.4 / 18.4 | 20 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 58.3% | ‑2.9 / 11.3 | 12 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 56.5% | 13.3 / 30.5 | 23 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 56.5% | 17.2 / 27.2 | 24 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 4,368,619 | 0 | A | C | 56.0% | 14.8 / 31.3 | 25 | V48G (GTA→GGA) | ampC | BlaEC family class C beta‑lactamase |
| * | NZ_CP009273 | 1,819,313 | 0 | G | A | 55.6% | 2.0 / 18.8 | 18 | intergenic (‑119/+84) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 2,778,686 | 0 | T | G | 55.6% | 25.5 / 37.8 | 27 | intergenic (‑316/+435) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 55.6% | 2.6 / 43.6 | 37 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 2,360,813 | 0 | C | T | 55.0% | 9.1 / 20.9 | 20 | F88F (TTC→TTT) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 55.0% | 6.2 / 16.8 | 20 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 55.0% | 7.5 / 17.8 | 20 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 17,050 | 0 | A | C | 54.5% | 11.1 / 13.7 | 11 | intergenic (‑147/‑439) | mokC/nhaA | type I toxin‑antitoxin system toxin MokC/Na+/H+ antiporter NhaA |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 54.5% | 11.1 / 13.5 | 11 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 54.5% | 4.1 / 13.3 | 11 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 53.3% | 25.5 / 40.5 | 30 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 52.9% | 14.2 / 24.5 | 17 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 52.6% | 5.9 / 22.2 | 19 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 52.2% | 22.6 / 31.2 | 23 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,774,215 | 0 | T | G | 52.0% | 22.3 / 31.8 | 25 | G343G (GGT→GGG) | lldD | quinone‑dependent L‑lactate dehydrogenase |