mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 86 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,877,816 | 0 | T | C | 72.7% | 21.5 / 13.6 | 22 | pseudogene (408/1482 nt) | yeaV | BCCT family transporter YeaV |
| * | NZ_CP009273 | 1,363,696 | 0 | T | C | 71.4% | 21.0 / 13.4 | 21 | F16S (TTC→TCC) | pspD | phage shock protein PspD |
| * | NZ_CP009273 | 3,771,044 | 0 | A | G | 70.6% | 37.2 / 24.3 | 34 | K96E (AAA→GAA) | lldP | L‑lactate permease |
| * | NZ_CP009273 | 385,080 | 0 | A | C | 69.4% | 59.1 / 30.0 | 36 | I35S (ATC→AGC) | hemB | porphobilinogen synthase |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 68.3% | 9.8 / 25.7 | 41 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,812,800 | 1 | . | C | 68.0% | 48.3 / 27.4 | 25 | intergenic (‑43/+62) | celF/chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| * | NZ_CP009273 | 502,414 | 0 | T | C | 66.7% | 20.2 / 22.6 | 27 | D42G (GAT→GGT) | ybaK | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK |
| * | NZ_CP009273 | 987,365 | 0 | A | G | 66.7% | 10.6 / 13.7 | 18 | N430D (AAT→GAT) | pepN | aminopeptidase N |
| * | NZ_CP009273 | 1,167,328 | 0 | T | C | 66.7% | 8.2 / 10.1 | 15 | E698G (GAA→GGA) | mfd | transcription‑repair coupling factor |
| * | NZ_CP009273 | 1,869,539 | 0 | G | C | 66.7% | 34.5 / 25.1 | 27 | P99A (CCG→GCG) | nimR | DNA‑binding transcriptional regulator NimR |
| * | NZ_CP009273 | 2,759,226 | 1 | . | G | 66.7% | 45.2 / 26.6 | 24 | intergenic (‑91/‑51) | yfjM/rnlA | DUF1524 domain‑containing protein/type II toxin‑antitoxin system toxin mRNA endoribonuclease RnlA |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 65.8% | 10.3 / 26.3 | 41 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 760,187 | 0 | G | C | 64.7% | ‑0.0 / 10.1 | 17 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 4,057,873 | 0 | C | G | 64.7% | 37.0 / 38.2 | 34 | W418C (TGG→TGC) | yihO | MFS transporter |
| * | NZ_CP009273 | 2,797,373 | 0 | T | . | 64.1% | 16.7 / 71.2 | 39 | coding (513/960 nt) | nrdF | class 1b ribonucleoside‑diphosphate reductase subunit beta |
| * | NZ_CP009273 | 130,698 | 0 | A | T | 64.0% | 23.4 / 26.3 | 25 | *866L (TAA→TTA) | acnB | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| * | NZ_CP009273 | 1,276,249 | 0 | G | . | 63.6% | 0.8 / 15.7 | 11 | coding (930/3744 nt) | narG | nitrate reductase subunit alpha |
| * | NZ_CP009273 | 108,789 | 0 | T | C | 62.5% | ‑1.0 / 17.2 | 24 | S100G (AGC→GGC) | zapD | cell division protein ZapD |
| * | NZ_CP009273 | 1,394,663 | 0 | T | C | 62.5% | 4.9 / 13.7 | 16 | G456G (GGA→GGG) | abgT | p‑aminobenzoyl‑glutamate transporter |
| * | NZ_CP009273 | 585,386 | 0 | A | G | 60.9% | 7.1 / 24.3 | 23 | L342P (CTC→CCC) | nfrA | bacteriophage adsorption protein NfrA |