mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 131 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 595,032 | 0 | T | G | 72.7% | 21.9 / 21.8 | 33 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 72.5% | 31.9 / 26.3 | 51 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 71.9% | ‑0.1 / 23.2 | 33 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 70.6% | 26.6 / 27.6 | 51 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,235,279 | 0 | T | G | 66.7% | 4.9 / 11.8 | 15 | G315G (GGT→GGG) | dadX | catabolic alanine racemase DadX |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 65.6% | 5.1 / 29.4 | 32 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 63.6% | ‑4.1 / 19.4 | 33 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 700,996 | 0 | C | A | 63.6% | ‑6.4 / 16.6 | 22 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 172,772 | 0 | A | G | 63.3% | ‑2.8 / 17.4 | 30 | G393G (GGA→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 63.2% | 2.2 / 12.4 | 19 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 1,074,924 | 0 | A | G | 60.9% | 6.9 / 22.8 | 23 | D55G (GAT→GGT) | putP | sodium/proline symporter PutP |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 60.7% | ‑1.7 / 34.8 | 28 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 60.0% | 25.9 / 34.5 | 35 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 701,009 | 0 | T | A | 59.1% | ‑2.1 / 24.2 | 23 | I537N (ATC→AAC) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 2,636,048 | 0 | T | G | 58.6% | 17.9 / 36.8 | 29 | A52A (GCA→GCC) | rodZ | cytoskeleton protein RodZ |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 57.9% | ‑5.2 / 15.8 | 19 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 57.1% | ‑4.8 / 21.7 | 21 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,380,331 | 0 | T | G | 56.2% | 10.3 / 13.2 | 16 | intergenic (+21/‑82) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 55.2% | 34.6 / 39.8 | 29 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 54.2% | 19.5 / 30.3 | 24 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4532499 = | 26 (0.590) | 4 (0.100) | 4/152 | 2.8 | 13.3% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 29 (0.740) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||