mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 26 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,419,801 | 0 | T | G | 66.7% | 5.2 / 15.9 | 18 | L41V (TTG→GTG) | cycA | D‑serine/D‑alanine/glycine transporter |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 63.6% | ‑1.7 / 12.5 | 11 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 1,430,449 | 0 | A | C | 62.5% | 4.2 / 11.7 | 16 | G234G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 2,794,496 | 0 | T | G | 61.5% | 6.4 / 11.2 | 13 | V58G (GTG→GGG) | nrdI | class Ib ribonucleoside‑diphosphate reductase assembly flavoprotein NrdI |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 60.9% | 0.2 / 48.6 | 46 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,229,859 | 0 | A | C | 60.0% | 0.1 / 10.8 | 15 | G105G (GGT→GGG) | nhaB | Na(+)/H(+) antiporter NhaB |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 58.7% | 5.1 / 51.5 | 46 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 2,678,659 | 0 | A | C | 57.1% | 8.9 / 16.8 | 14 | Y70D (TAT→GAT) | glyA | serine hydroxymethyltransferase |
| * | NZ_CP009273 | 3,679,381 | 0 | A | C | 57.1% | 3.3 / 13.5 | 14 | G1051G (GGT→GGG) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 4,290,979 | 0 | T | G | 57.1% | 7.4 / 13.9 | 14 | T639T (ACA→ACC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 56.5% | 10.1 / 27.7 | 23 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 447,883 | 0 | A | C | 54.5% | 7.1 / 10.6 | 11 | G373G (GGT→GGG) | ampG | muropeptide MFS transporter AmpG |
| * | NZ_CP009273 | 673,607 | 0 | C | A | 54.5% | 4.2 / 13.3 | 11 | T246N (ACT→AAT) | djlB | J domain‑containing protein |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 54.5% | 6.3 / 10.3 | 11 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,941,189 | 0 | G | A | 54.5% | 2.8 / 11.9 | 11 | L47F (CTT→TTT) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 3,941,191 | 0 | T | G | 54.5% | 7.2 / 12.4 | 11 | N46T (AAC→ACC) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 1,673,569 | 0 | A | C | 53.8% | 9.9 / 16.2 | 13 | T296P (ACC→CCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 53.8% | 4.8 / 14.1 | 13 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 3,344,212 | 0 | A | C | 53.3% | 13.6 / 20.7 | 15 | S725A (TCA→GCA) | arcB | aerobic respiration two‑component sensor histidine kinase ArcB |
| * | NZ_CP009273 | 4,464,532 | 0 | T | G | 53.1% | 25.4 / 29.8 | 33 | *198G (TGA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |