mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4621634 = | 121 (1.370) | 5 (0.060) | 5/246 | NT | 4.5% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 102 (1.250) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | 4542682 = | 131 (1.480) | 3 (0.040) | 3/248 | NT | 2.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 138 (1.670) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4411257 = | 99 (1.120) | 3 (0.040) | 3/246 | NT | 3.3% | intergenic (+6/‑45) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein |
| ? | NC_000913 | 4411284 = | 84 (1.030) | intergenic (+33/‑18) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein | |||||
| * | ? | NC_000913 | 4349222 = | 125 (1.410) | 4 (0.050) | 4/242 | NT | 3.6% | intergenic (‑478/+93) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
| ? | NC_000913 | 4349263 = | 101 (1.250) | intergenic (‑519/+52) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_000913 | = 4175760 | 115 (1.300) | 3 (0.040) | 3/248 | NT | 2.7% | noncoding (7/76 nt) | thrT | tRNA‑Thr |
| ? | NC_000913 | = 4175818 | 110 (1.330) | noncoding (65/76 nt) | thrT | tRNA‑Thr | |||||
| * | ? | NC_000913 | 3158885 = | 99 (1.120) | 3 (0.040) | 3/252 | NT | 3.2% | intergenic (+1/+42) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein |
| ? | NC_000913 | 3158930 = | 85 (1.010) | coding (2217/2220 nt) | ygiQ | Radical SAM superfamily protein | |||||
| * | ? | NC_000913 | = 2146839 | 82 (0.930) | 3 (0.040) | 3/254 | NT | 3.4% | coding (702/849 nt) | alkA | 3‑methyl‑adenine DNA glycosylase II |
| ? | NC_000913 | = 2146852 | 90 (1.060) | coding (689/849 nt) | alkA | 3‑methyl‑adenine DNA glycosylase II | |||||
| * | ? | NC_000913 | 1570598 = | 112 (1.260) | 5 (0.060) +CCGTTACCGTTAAAC |
5/236 | NT | 4.7% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666176 = | 115 (1.300) | intergenic (‑366/+4) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | 1442174 = | 119 (1.340) | 3 (0.040) | 3/248 | NT | 2.9% | coding (670/990 nt) | ldhA | fermentative D‑lactate dehydrogenase, NAD‑dependent |
| ? | NC_000913 | 1442209 = | 89 (1.080) | coding (635/990 nt) | ldhA | fermentative D‑lactate dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | 1417458 = | 160 (1.810) | 4 (0.050) | 4/246 | NT | 2.7% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| ? | NC_000913 | 1417483 = | 141 (1.720) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein | |||||