breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 14 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4621634 =121 (1.370)5 (0.060) 5/246 NT 4.5% intergenic (+32/‑135) deoD/yjjJ purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase
?NC_000913 4621662 = 102 (1.250)intergenic (+60/‑107) deoD/yjjJ purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase
* ? NC_000913 4542682 =131 (1.480)3 (0.040) 3/248 NT 2.3% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 138 (1.670)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4411257 =99 (1.120)3 (0.040) 3/246 NT 3.3% intergenic (+6/‑45) yjfJ/yjfK PspA/IM30 family protein/DUF2491 family protein
?NC_000913 4411284 = 84 (1.030)intergenic (+33/‑18) yjfJ/yjfK PspA/IM30 family protein/DUF2491 family protein
* ? NC_000913 4349222 =125 (1.410)4 (0.050) 4/242 NT 3.6% intergenic (‑478/+93) dcuB/dcuR C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS
?NC_000913 4349263 = 101 (1.250)intergenic (‑519/+52) dcuB/dcuR C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS
* ? NC_000913 = 4175760115 (1.300)3 (0.040) 3/248 NT 2.7% noncoding (7/76 nt) thrT tRNA‑Thr
?NC_000913 = 4175818 110 (1.330)noncoding (65/76 nt) thrT tRNA‑Thr
* ? NC_000913 3158885 =99 (1.120)3 (0.040) 3/252 NT 3.2% intergenic (+1/+42) yqhH/ygiQ outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein
?NC_000913 3158930 = 85 (1.010)coding (2217/2220 nt) ygiQ Radical SAM superfamily protein
* ? NC_000913 = 214683982 (0.930)3 (0.040) 3/254 NT 3.4% coding (702/849 nt) alkA 3‑methyl‑adenine DNA glycosylase II
?NC_000913 = 2146852 90 (1.060)coding (689/849 nt) alkA 3‑methyl‑adenine DNA glycosylase II
* ? NC_000913 1570598 =112 (1.260)5 (0.060)
+CCGTTACCGTTAAAC
5/236 NT 4.7% intergenic (‑109/+47) gadC/gadB glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent
?NC_000913 3666176 = 115 (1.300)intergenic (‑366/+4) gadX/gadA acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent
* ? NC_000913 1442174 =119 (1.340)3 (0.040) 3/248 NT 2.9% coding (670/990 nt) ldhA fermentative D‑lactate dehydrogenase, NAD‑dependent
?NC_000913 1442209 = 89 (1.080)coding (635/990 nt) ldhA fermentative D‑lactate dehydrogenase, NAD‑dependent
* ? NC_000913 1417458 =160 (1.810)4 (0.050) 4/246 NT 2.7% intergenic (‑72/+30) recE/racC Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
?NC_000913 1417483 = 141 (1.720)intergenic (‑97/+5) recE/racC Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein