mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,176,173 | 0 | G | T | 58.0% | 74.1 / 179.9 | 143 | G135V (GGT→GTT) | med | transcriptional regulator Med |
| * | NZ_CP034943 | 3,637,344 | 0 | T | A | 55.1% | 55.0 / 191.2 | 128 | Y44N (TAC→AAC) | EO946_RS18740 | DUF2529 domain‑containing protein |
| * | NZ_CP034943 | 1,112,969 | 0 | C | T | 54.2% | 43.4 / 163.8 | 118 | L1022F (CTT→TTT) | addB | helicase‑exonuclease AddAB subunit AddB |
| * | NZ_CP034943 | 2,981,253 | 0 | C | T | 50.0% | ‑5.3 / 18.9 | 14 | noncoding (1267/1550 nt) | EO946_RS15435 | 16S ribosomal RNA |
| * | NZ_CP034943 | 452,125 | 0 | T | A | 43.6% | 53.9 / 155.3 | 111 | K146I (AAA→ATA) | EO946_RS02320 | dienelactone hydrolase family protein |
| * | NZ_CP034943 | 3,285,647 | 0 | C | A | 43.3% | 143.3 / inf | 247 | V252L (GTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,580 | 0 | A | G | 39.7% | 189.1 / 271.3 | 209 | I274T (ATA→ACA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 2,991,227 | 0 | T | G | 38.8% | 92.1 / 37.6 | 85 | intergenic (+28/‑179) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 3,245,050 | 0 | C | A | 36.8% | 46.5 / 58.3 | 57 | intergenic (‑72/+121) | EO946_RS16785/EO946_RS16790 | UvrD‑helicase domain‑containing protein/trimeric intracellular cation channel family protein |
| * | NZ_CP034943 | 2,991,236 | 0 | C | G | 36.6% | 110.5 / 28.3 | 81 | intergenic (+37/‑170) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 3,285,567 | 0 | C | T | 36.4% | 224.7 / 237.4 | 207 | L278L (CTG→CTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,575 | 0 | T | G | 35.9% | 249.5 / 214.1 | 210 | N276H (AAT→CAT) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 44,871 | 0 | G | C | 33.0% | 150.4 / 105.5 | 101 | intergenic (‑52/‑449) | abrB/metG | transition state genes transcriptional regulator AbrB/methionine‑‑tRNA ligase |
| * | NZ_CP034943 | 44,865 | 0 | T | A | 32.7% | 147.7 / 110.4 | 101 | intergenic (‑46/‑455) | abrB/metG | transition state genes transcriptional regulator AbrB/methionine‑‑tRNA ligase |
| * | NZ_CP034943 | 44,870 | 0 | C | T | 32.7% | 133.9 / 99.5 | 101 | intergenic (‑51/‑450) | abrB/metG | transition state genes transcriptional regulator AbrB/methionine‑‑tRNA ligase |
| * | NZ_CP034943 | 3,285,713 | 0 | G | A | 32.3% | 190.9 / 122.6 | 127 | L230L (CTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 177,014 | 0 | C | G | 31.6% | 172.1 / 21.4 | 109 | intergenic (+187/‑85) | EO946_RS01020/EO946_RS01025 | alcohol dehydrogenase/SulP family inorganic anion transporter |
| * | NZ_CP034943 | 2,270,064 | 0 | G | C | 30.1% | 153.3 / 17.8 | 90 | L39V (CTA→GTA) | prsW | glutamic‑type intramembrane protease PrsW |
| * | NZ_CP034943 | 595,203 | 0 | C | A | 28.4% | 154.4 / 20.6 | 88 | T30K (ACG→AAG) | EO946_RS03130 | MMPL family transporter |
| * | NZ_CP034943 | 1,730,075 | 0 | G | C | 27.4% | 133.2 / 18.9 | 79 | E166Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 607695 = | 112 (0.820) | 22 (0.170) +AGTAGCCCCT |
16/250 | 3.9 | 13.1% | coding (538/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 204 (1.490) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607623 = | 118 (0.860) | 16 (0.130) +AGTAGCCCCT |
11/250 | 5.2 | 9.7% | coding (466/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 204 (1.490) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607480 | 144 (1.060) | 7 (0.050) +GGCTACT |
5/256 | 7.8 | 5.4% | coding (323/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607695 = | 114 (0.840) | coding (538/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607659 = | 107 (0.780) | 6 (0.050) +AGTAGCCCCT |
4/250 | 8.2 | 4.0% | coding (502/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 204 (1.490) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 2557054 = | 115 (0.840) | 3 (0.020) | 3/244 | 8.7 | 2.8% | coding (180/756 nt) | EO946_RS13225 | metal‑binding protein ZinT |
| ? | NZ_CP034943 | = 2557050 | 104 (0.840) | coding (184/756 nt) | EO946_RS13225 | metal‑binding protein ZinT | |||||
| * | ? | NZ_CP034943 | = 1492062 | 175 (1.290) | 4 (0.030) +CAGCCA |
3/256 | 9.0 | 2.3% | coding (57/153 nt) | EO946_RS07795 | YjcZ family sporulation protein |
| ? | NZ_CP034943 | 1492063 = | 175 (1.280) | coding (56/153 nt) | EO946_RS07795 | YjcZ family sporulation protein | |||||