mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 38.9% | 217.3 / 300.7 | 248 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,708,751 | 0 | A | G | 32.7% | 42.5 / 39.1 | 55 | E611E (GAA→GAG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 2,560,996 | 0 | G | T | 22.5% | 244.0 / 10.6 | 112 | intergenic (+98/‑372) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| * | U00096 | 2,560,985 | 0 | C | A | 20.9% | 255.6 / 13.7 | 115 | intergenic (+87/‑383) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| * | U00096 | 422,429 | 0 | T | G | 20.7% | 440.4 / 25.0 | 191 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 423,552 | 0 | T | G | 20.0% | 362.2 / 23.3 | 152 | G345G (GGT→GGG) | malZ | maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 696863 = | 65 (0.230) | 89 (0.340) +GAAGAAACAATC |
32/268 | 22.9 | 35.9% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 281 (0.970) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | 4542682 = | 246 (0.850) | 21 (0.080) | 19/274 | 30.0 | 7.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 279 (1.030) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 781577 = | 166 (0.580) | 134 (0.470) +G |
20/290 | 30.7 | 53.3% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 70 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287084 | 95 (0.330) | 25 (0.100) | 11/252 | 33.5 | 14.0% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 226 (0.910) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | = 4542690 | 250 (0.870) | 11 (0.040) | 9/274 | 36.9 | 4.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 278 (1.030) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 2560972 | 135 (0.470) | 6 (0.020) | 6/252 | 37.8 | 4.9% | intergenic (+74/‑396) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| ? | U00096 | 2561043 = | 119 (0.480) | intergenic (+145/‑325) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM | |||||
| * | ? | U00096 | = 2308756 | 252 (0.890) | 8 (0.030) | 8/286 | 38.7 | 3.1% | coding (586/651 nt) | alkB | DNA oxidative demethylase |
| ? | U00096 | = 2515616 | NA (NA) | noncoding (1344/1345 nt) | IS186 | repeat region | |||||
| * | ? | U00096 | = 1287084 | 95 (0.330) | 6 (0.020) | 4/254 | 40.1 | 3.6% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | = 4175537 | 239 (0.950) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | U00096 | 2308752 = | 254 (0.900) | 6 (0.020) | 6/286 | 40.6 | 2.3% | coding (590/651 nt) | alkB | DNA oxidative demethylase |
| ? | U00096 | 2514273 = | NA (NA) | noncoding (1/1345 nt) | IS186 | repeat region | |||||
| * | ? | U00096 | 2817670 = | 264 (0.920) | 5 (0.020) | 4/292 | 43.1 | 2.6% | intergenic (‑167/+114) | yqaB/argQ | fructose‑1‑phosphate phosphatase YqaB/tRNA‑Arg |
| ? | U00096 | = 2818216 | 106 (0.370) | noncoding (59/77 nt) | argY | tRNA‑Arg | |||||