mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 40.9% | 142.8 / 234.7 | 187 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,552,191 | 0 | C | A | 24.5% | 319.1 / 24.5 | 148 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase N subunit gamma/DNA‑binding transcriptional regulator YddM |
| * | U00096 | 422,429 | 0 | T | G | 22.2% | 404.5 / 25.7 | 181 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 4542682 = | 300 (1.090) | 31 (0.120) | 28/274 | 20.8 | 9.7% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 298 (1.160) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 4542690 | 293 (1.070) | 26 (0.100) | 25/274 | 22.1 | 8.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 292 (1.130) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 696863 = | 63 (0.230) | 74 (0.290) +GAAGAAACAATC |
22/268 | 23.0 | 30.9% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 298 (1.080) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | 781369 = | 137 (0.500) | 56 (0.210) +G |
18/290 | 26.5 | 35.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521128 | 72 (0.260) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287084 | 90 (0.330) | 29 (0.120) | 12/252 | 27.5 | 14.8% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 257 (1.080) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | = 1287262 | 145 (0.530) | 9 (0.040) | 8/250 | 30.3 | 7.4% | noncoding (67/85 nt) | tyrV | tRNA‑Tyr |
| ? | U00096 | 1287382 = | 102 (0.430) | intergenic (‑54/+156) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | U00096 | 781369 = | 137 (0.500) | 43 (0.160) +GAG |
9/286 | 31.9 | 30.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521006 | 66 (0.240) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | U00096 | = 2818077 | 174 (0.630) | 7 (0.030) | 6/252 | 32.1 | 4.1% | noncoding (59/77 nt) | argZ | tRNA‑Arg |
| ? | U00096 | 2818358 = | 180 (0.760) | intergenic (‑84/+115) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | U00096 | 2817923 = | 169 (0.610) | 6 (0.030) | 5/252 | 33.0 | 3.8% | intergenic (‑63/+136) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | U00096 | = 2818057 | 162 (0.680) | intergenic (‑197/+2) | argQ/argZ | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | U00096 | 2817670 = | 315 (1.150) | 10 (0.040) | 7/292 | 33.8 | 4.8% | intergenic (‑167/+114) | yqaB/argQ | fructose‑1‑phosphate phosphatase YqaB/tRNA‑Arg |
| ? | U00096 | = 2818216 | 83 (0.300) | noncoding (59/77 nt) | argY | tRNA‑Arg | |||||