mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 37.5% | 150.9 / 187.2 | 161 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,708,751 | 0 | A | G | 32.3% | 18.9 / 20.7 | 32 | E611E (GAA→GAG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 4,296,155 | 0 | T | C | 28.2% | 56.2 / 29.1 | 39 | intergenic (+361/+281) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,708,901 | 0 | A | C | 24.7% | 151.2 / 12.3 | 88 | R661R (CGA→CGC) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 422,429 | 0 | T | G | 23.3% | 264.8 / 22.7 | 129 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 2,947,465 | 0 | T | . | 21.7% | 165.5 / 42.8 | 61 | intergenic (+2/‑32) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 2,947,467 | 0 | A | C | 21.1% | 125.8 / 24.7 | 52 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 935,584 | 0 | A | T | 20.9% | 164.4 / 17.5 | 89 | P787P (CCA→CCT) | ftsK | cell division DNA translocase FtsK |
| * | U00096 | 3,945,819 | 0 | G | A | 20.0% | 110.3 / 10.1 | 50 | noncoding (2116/2904 nt) | rrlC | 23S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | = 1287084 | 60 (0.280) | 37 (0.200) | 20/252 | 16.0 | 25.8% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 161 (0.880) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | 781369 = | 148 (0.700) | 70 (0.330) +G |
21/290 | 17.6 | 42.1% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 46 (0.220) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 4542690 | 273 (1.290) | 19 (0.100) | 18/274 | 18.1 | 6.9% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 255 (1.290) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 781446 | 140 (0.660) | 58 (0.320) | 14/252 | 18.9 | 30.8% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | U00096 | 2521487 = | 140 (0.770) | intergenic (+159/+106) | lysV/xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR | |||||
| * | ? | U00096 | 4542682 = | 278 (1.320) | 14 (0.070) | 14/274 | 20.1 | 5.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 257 (1.300) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 781577 = | 137 (0.650) | 100 (0.480) +G |
13/290 | 21.4 | 52.4% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 46 (0.220) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 214 (1.010) | 61 (0.290) +G |
13/290 | 21.4 | 32.1% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 46 (0.220) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 2357873 | 154 (0.730) | 18 (0.090) | 13/292 | 21.5 | 10.3% | intergenic (+70/+169) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | U00096 | 2357886 = | 161 (0.760) | intergenic (+83/+156) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase | |||||
| * | ? | U00096 | = 1049003 | 232 (1.100) | 4 (0.020) | 4/292 | 27.7 | 1.7% | coding (330/645 nt) | gfcB | lipoprotein GfcB |
| ? | U00096 | = 3913653 | 228 (1.080) | coding (16/1830 nt) | glmS | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase | |||||
| * | ? | U00096 | 639051 = | 224 (1.060) | 3 (0.020) | 3/274 | 27.8 | 1.4% | coding (107/564 nt) | ahpC | alkyl hydroperoxide reductase, AhpC component |
| ? | U00096 | = 639047 | 215 (1.090) | coding (103/564 nt) | ahpC | alkyl hydroperoxide reductase, AhpC component | |||||