mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 375,729 | 0 | T | C | 43.7% | 131.5 / 63.8 | 120 | L219P (CTG→CCG) | aroM | AroM family protein |
| * | NC_012967 | 2,016,091 | 0 | T | A | 42.4% | 32.1 / 28.5 | 33 | intergenic (‑123/+56) | yeeE/plaP | thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP |
| * | NC_012967 | 3,011,193 | 0 | T | G | 36.4% | 49.0 / 15.4 | 44 | intergenic (+164/‑179) | ECB_RS14865/ECB_RS14870 | DUF4942 domain‑containing protein/IS110 family transposase |
| * | NC_012967 | 3,950,878 | 0 | T | G | 21.2% | 330.4 / 13.3 | 151 | T7P (ACC→CCC) | hemX | uroporphyrinogen‑III C‑methyltransferase |
| * | NC_012967 | 1,132,851 | 0 | A | G | 20.0% | 359.3 / 16.9 | 151 | N65N (AAT→AAC) | yceI | YceI family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 222 (1.020) | 18 (0.100) | 17/114 | 11.8 | 10.6% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 125 (0.720) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| * | ? | NC_012967 | = 2278812 | 191 (0.880) | 3 (0.020) | 3/128 | 20.8 | 1.6% | coding (2201/4515 nt) | ECB_RS11350 | alpha‑2‑macroglobulin |
| ? | NC_012967 | = 2278856 | 205 (1.050) | coding (2157/4515 nt) | ECB_RS11350 | alpha‑2‑macroglobulin | |||||
| * | ? | NC_012967 | 834740 = | 241 (1.110) | 4 (0.020) | 3/128 | 20.8 | 2.0% | intergenic (‑59/‑217) | mcbA/rlmF | DUF1471 family periplasmic protein McbA/23S rRNA (adenine(1618)‑N(6))‑methyltransferase RlmF |
| ? | NC_012967 | = 3702934 | 171 (0.880) | coding (64/462 nt) | yibG | sel1 repeat family protein | |||||
| * | ? | NC_012967 | 3354114 = | NA (NA) | 5 (0.020) | 3/132 | 21.1 | NA | noncoding (566/2908 nt) | ECB_RS16560 | 23S ribosomal RNA |
| ? | NC_012967 | 3354161 = | NA (NA) | noncoding (519/2908 nt) | ECB_RS16560 | 23S ribosomal RNA | |||||
| * | ? | NC_012967 | = 2286543 | 203 (0.940) | 3 (0.010) | 3/134 | 21.2 | 1.7% | coding (277/723 nt) | ubiG | bifunctional 3‑demethylubiquinone 3‑O‑methyltransferase/2‑octaprenyl‑6‑hydroxy phenol methylase |
| ? | NC_012967 | = 4385857 | 165 (0.810) | coding (1049/2442 nt) | rnr | ribonuclease R | |||||
| * | ? | NC_012967 | = 840962 | 154 (0.710) | 3 (0.010) | 3/134 | 21.2 | 1.9% | intergenic (‑333/+71) | glnH/dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps |
| ? | NC_012967 | = 841013 | 169 (0.830) | intergenic (‑384/+20) | glnH/dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps | |||||