breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 36,145 G→T intergenic (+396/‑19) SA_RS00275 → / → SA_RS00280 DUF3578 domain‑containing protein/hypothetical protein
RA 37,603 C→T pseudogene (581/984 nt) SA_RS00295 ← protein rep
RA 37,636 G→A pseudogene (548/984 nt) SA_RS00295 ← protein rep
RA 41,688 C→T intergenic (‑100/+93) aadD1 ← / ← SA_RS00315 aminoglycoside O‑nucleotidyltransferase ANT(4')‑Ia/IS6‑like element IS257 family transposase
RA 46,963 G→T S26S (TCC→TCA)  mecA ← PBP2a family beta‑lactam‑resistant peptidoglycan transpeptidase MecA
RA 80,872 +G pseudogene (25/559 nt) SA_RS00500 → K(+)‑transporting ATPase subunit C
RA 81,249 Δ1 bp pseudogene (402/559 nt) SA_RS00500 → K(+)‑transporting ATPase subunit C
RA 81,255 Δ1 bp pseudogene (408/559 nt) SA_RS00500 → K(+)‑transporting ATPase subunit C
RA 81,624 +C intergenic (+218/+326) SA_RS00500 → / ← SA_RS00505 K(+)‑transporting ATPase subunit C/hypothetical protein
RA 2,112,579 G→A intergenic (‑427/+45) SA_RS10720 ← / ← SA_RS10725 23S ribosomal RNA/16S ribosomal RNA
RA 2,561,821 C→T pseudogene (1997/4115 nt) SA_RS14965 ← E domain‑containing protein
RA 2,753,061 T→C M281V (ATG→GTG)  asp1 ← accessory Sec system protein Asp1

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002745 = 2112399NA (NA)237 (1.010) 114/460 0.2 100% intergenic (‑247/+225) SA_RS10720/SA_RS10725 23S ribosomal RNA/16S ribosomal RNA
?NC_002745 2112505 = 0 (0.000)intergenic (‑353/+119) SA_RS10720/SA_RS10725 23S ribosomal RNA/16S ribosomal RNA