mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 219 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002745 | 1,831,488 | 0 | G | T | 59.5% | 333.6 / inf | 532 | A117A (GCG→GCT) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,482 | 0 | C | T | 59.4% | 412.8 / inf | 533 | G115G (GGC→GGT) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,521 | 0 | T | A | 59.0% | 363.0 / inf | 502 | V128V (GTT→GTA) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,523 | 0 | A | G | 58.5% | 366.6 / inf | 506 | K129R (AAA→AGA) ‡ | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,524 | 0 | A | G | 58.5% | 380.4 / inf | 506 | K129K (AAA→AAG) ‡ | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,528 | 0 | A | C | 58.4% | 584.7 / inf | 506 | I131L (ATA→CTA) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,533 | 0 | T | A | 57.2% | 335.7 / inf | 506 | G132G (GGT→GGA) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,461 | 0 | T | A | 56.9% | 279.9 / inf | 499 | A108A (GCT→GCA) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,458 | 0 | T | A | 56.7% | 236.9 / inf | 497 | V107V (GTT→GTA) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,557 | 0 | T | C | 56.6% | 279.6 / inf | 494 | P140P (CCT→CCC) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,540 | 0 | A | C | 56.5% | 419.3 / inf | 495 | K135Q (AAG→CAG) ‡ | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,542 | 0 | G | A | 56.1% | 260.0 / inf | 498 | K135K (AAG→AAA) ‡ | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,538 | 0 | G | A | 55.9% | 228.3 / inf | 500 | S134N (AGT→AAT) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,551 | 0 | A | T | 55.7% | 239.5 / inf | 501 | I138I (ATA→ATT) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,569 | 0 | G | C | 55.7% | 290.9 / inf | 477 | A144A (GCG→GCC) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,440 | 0 | A | G | 55.6% | 235.2 / inf | 448 | I101M (ATA→ATG) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,545 | 0 | G | A | 55.6% | 271.5 / inf | 502 | R136R (CGG→CGA) ‡ | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,544 | 0 | G | A | 55.4% | 263.1 / inf | 502 | R136Q (CGG→CAG) ‡ | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,444 | 0 | T | C | 55.4% | 193.2 / inf | 448 | L103L (TTG→CTG) | arsB | arsenite efflux transporter membrane subunit ArsB |
| * | NC_002745 | 1,831,547 | 0 | C | T | 55.4% | 186.4 / inf | 505 | A137V (GCC→GTC) | arsB | arsenite efflux transporter membrane subunit ArsB |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002745 | 2005321 = | 133 (0.560) | 11 (0.050) | 10/436 | 8.8 | 6.3% | coding (170/198 nt) | SA_RS10065 | phospholipase |
| ? | NC_002745 | = 2049577 | 204 (0.920) | pseudogene (7/831 nt) | sph | sphingomyelin phosphodiesterase | |||||
| * | ? | NC_002745 | = 612188 | 114 (0.480) | 6 (0.030) | 4/448 | 11.7 | 5.2% | coding (3746/4158 nt) | sdrD | MSCRAMM family adhesin SdrD |
| ? | NC_002745 | 612213 = | 110 (0.480) | coding (3771/4158 nt) | sdrD | MSCRAMM family adhesin SdrD | |||||
| * | ? | NC_002745 | 607597 = | 107 (0.450) | 8 (0.040) +GCTATCTGAGTCTGAG |
3/432 | 12.2 | 6.3% | coding (2383/2862 nt) | sdrC | MSCRAMM family adhesin SdrC |
| ? | NC_002745 | = 607832 | 150 (0.630) | coding (2618/2862 nt) | sdrC | MSCRAMM family adhesin SdrC | |||||
| * | ? | NC_002745 | 607567 = | 106 (0.450) | 5 (0.020) | 3/448 | 12.4 | 3.8% | coding (2353/2862 nt) | sdrC | MSCRAMM family adhesin SdrC |
| ? | NC_002745 | = 607836 | 152 (0.670) | coding (2622/2862 nt) | sdrC | MSCRAMM family adhesin SdrC | |||||
| * | ? | NC_002745 | 917598 = | 272 (1.150) | 3 (0.010) | 3/460 | 12.5 | 1.4% | coding (533/2406 nt) | mnhA1 | Na+/H+ antiporter Mnh1 subunit A |
| ? | NC_002745 | = 919792 | 158 (0.670) | coding (77/378 nt) | ygs | S1 domain‑containing post‑transcriptional regulator Ygs | |||||
| * | ? | NC_002745 | 612208 = | 116 (0.490) | 3 (0.010) | 3/460 | 12.5 | 1.9% | coding (3766/4158 nt) | sdrD | MSCRAMM family adhesin SdrD |
| ? | NC_002745 | = 616224 | 189 (0.810) | coding (3231/3426 nt) | sdrE | MSCRAMM family adhesin SdrE | |||||
| * | ? | NC_002745 | 2325293 = | 264 (1.120) | 3 (0.010) | 3/462 | 12.6 | 1.1% | coding (882/1212 nt) | SA_RS11850 | MFS transporter |
| ? | NC_002745 | 2325304 = | 267 (1.130) | coding (893/1212 nt) | SA_RS11850 | MFS transporter | |||||
| * | ? | NC_002745 | 2070088 = | 213 (0.900) | 3 (0.010) | 3/462 | 12.6 | 1.1% | coding (152/219 nt) | SA_RS10520 | helix‑turn‑helix transcriptional regulator |
| ? | NC_002745 | 2604645 = | 348 (1.480) | coding (679/1044 nt) | SA_RS13305 | PTS fructose transporter subunit IIC | |||||
| * | ? | NC_002745 | = 509339 | NA (NA) | 3 (0.010) | 3/464 | 12.6 | 100% | noncoding (1151/2923 nt) | SA_RS02520 | 23S ribosomal RNA |
| ? | NC_002745 | 509376 = | 0 (0.000) | noncoding (1188/2923 nt) | SA_RS02520 | 23S ribosomal RNA | |||||