mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3904966 | 250 (0.990) | 5 (0.020) | 4/278 | NT | 2.0% | intergenic (‑81/+233) | pstS/glmS | periplasmic phosphate binding protein, high‑affinity/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| ? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | 3645396 = | NA (NA) | 3 (0.010) | 3/278 | NT | 1.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3796549 = | 195 (0.780) | coding (949/1080 nt) | waaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 7 (0.030) | 6/278 | NT | 2.5% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | = 3750596 | 271 (1.080) | coding (592/1152 nt) | yiaY | putative Fe‑containing alcohol dehydrogenase, Pfam00465 family | |||||
| * | ? | CP009273 | 777247 = | 153 (0.610) | 6 (0.040) | 6/180 | NT | 4.8% | intergenic (+139/‑294) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | CP009273 | = 2514669 | 137 (0.840) | noncoding (397/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 776678 | 157 (0.620) | 3 (0.010) | 3/242 | NT | 2.2% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | CP009273 | 2514844 = | 135 (0.620) | noncoding (572/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 3 (0.010) +AATTC |
3/268 | NT | 2.0% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 156 (0.620) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | = 344693 | 243 (0.970) | 3 (0.010) | 3/254 | NT | 1.4% | coding (301/891 nt) | prpB | 2‑methylisocitrate lyase |
| ? | CP009273 | 344871 = | 214 (0.930) | coding (479/891 nt) | prpB | 2‑methylisocitrate lyase | |||||