mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 1,123,238 | 0 | C | A | 60.0% | ‑4.7 / 13.0 | 31 | intergenic (‑240/+64) | gcvH_1/CJ019_01062 | Glycine cleavage system H protein/hypothetical protein |
| * | ACB143 | 3,440,331 | 0 | T | G | 54.5% | ‑2.7 / 10.9 | 24 | A19A (GCT→GCG) | CJ019_03266 | hypothetical protein |
| * | ACB143 | 6,087,126 | 0 | A | C | 53.3% | 1.4 / 11.8 | 15 | intergenic (+7/+25) | spuD_6/gabR_2 | Putrescine‑binding periplasmic protein SpuD/HTH‑type transcriptional regulatory proteinGabR |
| * | ACB143 | 690,173 | 0 | G | T | 47.4% | 3.7 / 13.3 | 19 | intergenic (+50/‑2409) | bauC/PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| * | ACB143 | 5,383,758 | 0 | C | G | 46.7% | 31.5 / 16.7 | 31 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB143 | 5,383,766 | 0 | G | T | 38.7% | 28.9 / 13.6 | 31 | intergenic (+536/‑322) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB143 | 4,425,070 | 0 | G | C | 36.8% | 8.3 / 10.2 | 19 | intergenic (‑29/‑89) | CJ019_04200/CJ019_04201 | hypothetical protein/hypothetical protein |
| * | ACB143 | 5,829,075 | 0 | A | C | 32.3% | 94.3 / 12.7 | 62 | V88G (GTA→GGA) | ftsY | Signal recognition particle receptor FtsY |
| * | ACB143 | 4,028,448 | 0 | G | A | 25.9% | 43.5 / 10.4 | 34 | intergenic (‑117/‑130) | CJ019_03802/mcpU_3 | hypothetical protein/Methyl‑accepting chemotaxis protein McpU |
| * | ACB143 | 4,028,428 | 0 | C | A | 25.6% | 76.1 / 11.9 | 41 | intergenic (‑97/‑150) | CJ019_03802/mcpU_3 | hypothetical protein/Methyl‑accepting chemotaxis protein McpU |
| * | ACB143 | 241,908 | 0 | C | A | 25.4% | 120.0 / 14.0 | 59 | Q148K (CAA→AAA) | rhtB_1 | Homoserine/homoserine lactone efflux protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 745525 = | 51 (0.970) | 3 (0.060) | 3/240 | 4.5 | 6.4% | coding (287/306 nt) | CJ019_00712 | hypothetical protein |
| ? | ACB143 | = 745521 | 41 (0.840) | coding (291/306 nt) | CJ019_00712 | hypothetical protein | |||||