mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 37.5% | 99.3 / 19.0 | 56 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,795,650 | 0 | A | C | 32.5% | 78.8 / 11.4 | 40 | V39G (GTG→GGG) | celF | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
| * | REL606 | 1,004,106 | 0 | A | C | 32.1% | 114.0 / 13.4 | 56 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 1,747,903 | 0 | G | T | 32.1% | 163.1 / 75.3 | 81 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 1,484,105 | 0 | A | G | 31.7% | 64.9 / 14.2 | 41 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 2,296,329 | 0 | A | C | 26.9% | 156.0 / 27.2 | 67 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 4,141,009 | 0 | G | A | 22.8% | 147.5 / 12.4 | 57 | E28K (GAA→AAA) | yijC | DNA‑binding transcriptional repressor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3370476 | 74 (1.510) | 6 (0.140) | 5/134 | 4.5 | 8.3% | intergenic (‑100/+47) | rpsM/rpmJ | 30S ribosomal protein S13/50S ribosomal protein L36 |
| ? | REL606 | = 3370479 | 67 (1.530) | intergenic (‑103/+44) | rpsM/rpmJ | 30S ribosomal protein S13/50S ribosomal protein L36 | |||||
| * | ? | REL606 | = 799331 | 85 (1.730) | 8 (0.180) | 5/140 | 4.7 | 10.0% | intergenic (‑56/+728) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor |
| ? | REL606 | = 799578 | 65 (1.420) | intergenic (‑303/+481) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor | |||||
| * | ? | REL606 | = 540643 | 86 (1.760) | 5 (0.110) | 3/134 | 5.5 | 6.5% | intergenic (+106/‑149) | emrE/ybcK | multidrug efflux protein/predicted recombinase |
| ? | REL606 | = 541201 | 67 (1.530) | coding (410/1527 nt) | ybcK | predicted recombinase | |||||
| * | ? | REL606 | 3737622 = | 48 (0.980) | 3 (0.060) | 3/144 | 5.7 | 6.1% | coding (205/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737741 = | 47 (1.000) | coding (86/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | 3022200 = | 38 (0.780) | 5 (0.110) | 3/142 | 5.7 | 9.4% | coding (485/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022657 = | 60 (1.290) | coding (28/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | 2329744 = | 56 (1.140) | 4 (0.090) | 3/142 | 5.7 | 6.5% | coding (519/1212 nt) | elaD | predicted enzyme |
| ? | REL606 | 2329947 = | 62 (1.340) | coding (722/1212 nt) | elaD | predicted enzyme | |||||
| * | ? | REL606 | 2041220 = | 34 (0.690) | 3 (0.060) | 3/142 | 5.7 | 6.7% | coding (164/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041465 = | 52 (1.120) | coding (1356/1428 nt) | wzx | O antigen translocase (Wzx) | |||||