breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 474,211 | Δ2 bp | coding (1094‑1095/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
RA | 647,840 | A→G | F353S (TTC→TCC) | mrdB ← | cell wall shape‑determining protein |
MC JC | 1,303,072 | Δ1,756 bp | [oppD]–[cls] | [oppD], oppF, yciU, [cls] | |
RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
RA | 1,454,614 | T→G | D722E (GAT→GAG) | hrpA → | ATP‑dependent helicase |
JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
RA | 1,920,708 | G→A | A151V (GCG→GTG) | znuA ← | high‑affinity zinc transporter periplasmic component |
RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
RA | 2,336,054 | G→A | A171V (GCA→GTA) | nuoM ← | NADH dehydrogenase subunit M |
RA | 2,358,409 | T→A | I24N (ATC→AAC) | pta → | phosphate acetyltransferase |
RA | 2,409,844 | +C | coding (102/933 nt) | yfdC → | predicted inner membrane protein |
RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
RA | 3,928,260 | T→A | I15N (ATC→AAC) | rho → | transcription termination factor Rho |
RA | 4,202,203 | Δ1 bp | coding (357/825 nt) | iclR ← | DNA‑binding transcriptional repressor |
JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2032758–2032783 | 2056031–2055883 | 23101–23274 | 13 [12] | [12] 13 | [manB]–[cpsG] | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,[cpsG] |