mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 431,505 | T→C | 8.2% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 1,169,390 | T→C | 10.6% | G206G (GGA→GGG) | SAS1097 ← | alpha‑hemolysin precursor |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| JC | BX571857 | 1,332,856 | 30 bp→30 bp | 14.0% | coding (185‑214/1239 nt) | SAS1239 → | conserved hypothetical protein |
| RA | BX571857 | 1,472,392 | G→T | 5.1% | pseudogene (3325/5622 nt) | ebh ← | very large surface anchored protein (pseudogene) |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 2,682,764 | G→C | 81.1% | S18* (TCA→TGA) | SAS2502 ← | putative anaerobic ribonucleotide reductase activating protein |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 296 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 493805 | NA (NA) | 4 (0.020) +GACTTCGGTC |
4/152 | NT | NA | noncoding (1753/2923 nt) | unknown | |
| ? | BX571857 | 493828 = | NA (NA) | noncoding (1776/2923 nt) | unknown | ||||||
| * | ? | BX571857 | 980997 = | NA (NA) | 21 (0.140) | 17/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 259 (1.150) | 122/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||