mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 109 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,274 | 0 | A | C | 62.5% | 6.2 / 11.5 | 16 | intergenic (+465/+287) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,280 | 0 | C | T | 62.5% | 6.6 / 10.9 | 16 | intergenic (+471/+281) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,299 | 0 | C | T | 57.9% | ‑3.5 / 18.0 | 19 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,301 | 0 | A | C | 57.9% | ‑2.5 / 17.5 | 19 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 57.9% | ‑6.5 / 22.5 | 19 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | C | 57.9% | 26.3 / 26.5 | 19 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 1,327,127 | 0 | C | T | 54.0% | 0.6 / 43.2 | 37 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,741,276 | 0 | C | G | 53.3% | ‑2.4 / 15.6 | 16 | intergenic (+467/+285) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 196,390 | 0 | T | C | 52.9% | 6.1 / 18.8 | 17 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,590 | 0 | T | C | 45.5% | 3.9 / 24.5 | 22 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,348,749 | 0 | A | G | 44.8% | 5.6 / 33.0 | 29 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 4,741,277 | 0 | C | T | 43.8% | ‑2.5 / 13.5 | 16 | intergenic (+468/+284) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 197,572 | 0 | G | A | 43.5% | 3.0 / 24.3 | 23 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,741,298 | 1 | . | T | 42.1% | ‑2.5 / 33.4 | 19 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,302 | 0 | A | G | 42.1% | ‑1.4 / 16.2 | 19 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 196,351 | 0 | C | G | 40.0% | 40.8 / 31.1 | 30 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,741,273 | 1 | . | C | 37.5% | 6.4 / 24.1 | 16 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,275 | 0 | A | G | 37.5% | 5.2 / 10.5 | 16 | intergenic (+466/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 699,725 | 0 | A | G | 36.0% | 19.7 / 17.5 | 26 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,705,459 | 0 | T | A | 35.3% | 8.7 / 13.9 | 17 | intergenic (‑151/+26) | kdpF/PP_4162 | potassium‑transporting ATPase subunit F/membrane protein |
| Marginal new junction evidence (lowest skew 10 of 107 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5698783 = | 39 (1.570) | 7 (0.320) | 7/230 | 1.7 | 17.7% | intergenic (+17/‑150) | hslU/PP_5002 | protease HslVU ATPase subunit/hypothetical protein |
| ? | NC_002947 | 5698866 = | 31 (1.430) | intergenic (+100/‑67) | hslU/PP_5002 | protease HslVU ATPase subunit/hypothetical protein | |||||
| * | ? | NC_002947 | 4091366 = | 30 (1.210) | 7 (0.290) | 7/254 | 1.9 | 19.8% | intergenic (+8/‑70) | gudP/garD | glucarate transporter/galactarate dehydratase |
| ? | NC_002947 | 4091395 = | 28 (1.170) | intergenic (+37/‑41) | gudP/garD | glucarate transporter/galactarate dehydratase | |||||
| * | ? | NC_002947 | 4893598 = | 40 (1.610) | 6 (0.300) | 5/210 | 2.0 | 16.5% | intergenic (+28/‑180) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947 | 4893677 = | 29 (1.470) | intergenic (+107/‑101) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
| * | ? | NC_002947 | = 1947843 | 37 (1.490) | 5 (0.250) | 5/212 | 2.0 | 13.4% | intergenic (‑61/+109) | PP_1748/PP_1749 | hypothetical protein/acetyltransferase |
| ? | NC_002947 | = 1947910 | 35 (1.750) | intergenic (‑128/+42) | PP_1748/PP_1749 | hypothetical protein/acetyltransferase | |||||
| * | ? | NC_002947 | = 5856874 | 40 (1.610) | 6 (0.250) | 6/254 | 2.1 | 13.7% | coding (745/1392 nt) | PP_5133 | membrane protein |
| ? | NC_002947 | = 5856913 | 37 (1.550) | coding (784/1392 nt) | PP_5133 | membrane protein | |||||
| * | ? | NC_002947 | 5724628 = | 25 (1.010) | 6 (0.250) | 6/254 | 2.1 | 18.2% | coding (2394/2574 nt) | opgH | glucans biosynthesis glucosyltransferase H |
| ? | NC_002947 | 5724661 = | 30 (1.250) | coding (2361/2574 nt) | opgH | glucans biosynthesis glucosyltransferase H | |||||
| * | ? | NC_002947 | 1715317 = | 37 (1.490) | 6 (0.250) | 6/252 | 2.1 | 13.9% | coding (221/831 nt) | PP_1510 | carboxyvinyl‑carboxyphosphonate phosphorylmutase |
| ? | NC_002947 | 1715357 = | 39 (1.640) | coding (261/831 nt) | PP_1510 | carboxyvinyl‑carboxyphosphonate phosphorylmutase | |||||
| * | ? | NC_002947 | 513624 = | 28 (1.130) | 6 (0.250) | 6/254 | 2.1 | 19.1% | coding (78/423 nt) | yhfA | hypothetical protein |
| ? | NC_002947 | 513648 = | 24 (1.000) | coding (102/423 nt) | yhfA | hypothetical protein | |||||
| * | ? | NC_002947 | = 3126733 | 35 (1.410) | 8 (0.320) | 6/262 | 2.2 | 18.9% | coding (735/960 nt) | PP_2744 | ribose‑phosphate pyrophosphokinase family protein |
| ? | NC_002947 | = 3126760 | 34 (1.380) | coding (708/960 nt) | PP_2744 | ribose‑phosphate pyrophosphokinase family protein | |||||
| * | ? | NC_002947 | = 857864 | 35 (1.410) | 6 (0.250) | 6/260 | 2.2 | 16.6% | coding (963/1443 nt) | phr | deoxyribodipyrimidine photolyase |
| ? | NC_002947 | = 857920 | 26 (1.060) | coding (907/1443 nt) | phr | deoxyribodipyrimidine photolyase | |||||