mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,851,650 | C→T | R232W (CGG→TGG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 5,610,686 | C→A | A17D (GCC→GAC) | emrE → | small multidrug resistance protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 4808205 | 4808218 | 14 | 16 [0] | [0] 27 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652785 | 24 (0.650) | 13 (0.420) | 10/232 | 2.0 | 56.0% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 1114875 = | 23 (0.630) | 10 (0.330) | 10/222 | 1.9 | 35.2% | intergenic (‑64/+115) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase |
| ? | NC_002947 | 1114951 = | 18 (0.600) | intergenic (‑140/+39) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase | |||||
| * | ? | NC_002947 | = 1114899 | 23 (0.630) | 8 (0.270) | 7/222 | 2.6 | 30.3% | intergenic (‑88/+91) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase |
| ? | NC_002947 | = 1114925 | 18 (0.600) | intergenic (‑114/+65) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase | |||||
| * | ? | NC_002947 | 1298192 = | NA (NA) | 11 (0.300) | 9/270 | 2.7 | NA | intergenic (+45/+384) | PP_1133/PP_1134 | transposase/hypothetical protein |
| ? | NC_002947 | 1298212 = | NA (NA) | intergenic (+65/+364) | PP_1133/PP_1134 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | 1419553 = | 13 (0.350) | 9 (0.320) | 8/208 | 2.2 | 56.4% | intergenic (‑36/+101) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 1419647 = | 4 (0.140) | intergenic (‑130/+7) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1419584 | 13 (0.350) | 11 (0.390) | 9/208 | 1.9 | 61.3% | intergenic (‑67/+70) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419614 | 4 (0.140) | intergenic (‑97/+40) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | 1487013 = | 29 (0.790) | 9 (0.320) | 7/212 | 2.5 | 33.0% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1487103 = | 14 (0.490) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
| * | ? | NC_002947 | 1499443 = | 39 (1.060) | 8 (0.260) | 7/226 | 2.7 | 26.5% | intergenic (+13/‑153) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499526 = | 12 (0.390) | intergenic (+96/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
| * | ? | NC_002947 | 1838113 = | 40 (1.090) | 9 (0.270) | 7/252 | 3.0 | 20.7% | intergenic (+18/+86) | PP_1642/PP_1643 | hypothetical protein/membrane protein |
| ? | NC_002947 | 1838195 = | 32 (0.940) | intergenic (+100/+4) | PP_1642/PP_1643 | hypothetical protein/membrane protein | |||||
| * | ? | NC_002947 | 1844176 = | 0 (0.000) | 28 (0.790) | 27/262 | 0.4 | 58.3% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2179419 | 40 (1.130) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1844179 | 0 (0.000) | 25 (0.700) | 23/264 | 0.7 | 60.2% | coding (657/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 2177745 = | 33 (0.930) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||
| * | ? | NC_002947 | = 2087064 | NA (NA) | 14 (0.400) | 13/262 | 1.8 | NA | coding (1136/1302 nt) | PP_1865 | transposase |
| ? | NC_002947 | = 2087083 | NA (NA) | coding (1155/1302 nt) | PP_1865 | transposase | |||||
| * | ? | NC_002947 | = 2258102 | NA (NA) | 9 (0.260) | 8/256 | 2.8 | 37.4% | intergenic (+114/‑278) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase |
| ? | NC_002947 | = 2258195 | 16 (0.440) | intergenic (+207/‑185) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase | |||||
| * | ? | NC_002947 | = 4641032 | 29 (0.790) | 7 (0.210) | 7/248 | 3.0 | 20.8% | coding (817/1383 nt) | gabP‑IV | gamma‑aminobutyrate permease |
| ? | NC_002947 | = 4641048 | 27 (0.810) | coding (801/1383 nt) | gabP‑IV | gamma‑aminobutyrate permease | |||||
| * | ? | NC_002947 | = 4647641 | 12 (0.330) | 5 (0.190) | 5/194 | 2.9 | 29.8% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 15 (0.580) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947 | 4808219 = | 0 (0.000) | 18 (0.660) | 10/202 | 1.7 | 59.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 25 (0.920) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 4896423 = | 32 (0.870) | 7 (0.230) | 7/230 | 2.7 | 24.1% | intergenic (+11/‑197) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4896512 = | 17 (0.550) | intergenic (+100/‑108) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||