mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.5% | 38.1 / 39.3 | 56 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 23 (0.600) | 7 (0.210) | 7/252 | 3.2 | 20.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 34 (1.000) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 618054 = | 37 (0.970) | 4 (0.120) | 4/258 | 4.5 | 10.4% | intergenic (+16/‑200) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains |
| ? | NC_000913 | 618087 = | 35 (1.010) | intergenic (+49/‑167) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains | |||||
| * | ? | NC_000913 | 2042116 = | 36 (0.940) | 5 (0.140) | 4/264 | 4.6 | 12.4% | intergenic (+91/‑252) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog |
| ? | NC_000913 | 2042149 = | 37 (1.040) | intergenic (+124/‑219) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 4 (0.110) | 4/272 | 4.7 | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 1774019 = | 45 (1.180) | 4 (0.110) | 4/268 | 4.7 | 8.9% | coding (231/867 nt) | ydiB | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | 1774066 = | 39 (1.080) | coding (278/867 nt) | ydiB | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 3740482 = | 37 (0.970) | 3 (0.080) | 3/266 | 5.2 | 7.9% | coding (778/1254 nt) | avtA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase |
| ? | NC_000913 | 3740571 = | 35 (0.980) | coding (867/1254 nt) | avtA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase | |||||
| * | ? | NC_000913 | 2840867 = | 35 (0.910) | 3 (0.080) | 3/268 | 5.2 | 8.2% | coding (1344/1458 nt) | ascF | cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| ? | NC_000913 | 2840899 = | 34 (0.940) | coding (1376/1458 nt) | ascF | cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components | |||||
| * | ? | NC_000913 | = 4460313 | 50 (1.310) | 3 (0.080) | 3/274 | 5.3 | 6.0% | coding (52/465 nt) | nrdG | anaerobic ribonucleotide reductase activating protein |
| ? | NC_000913 | = 4460324 | 45 (1.220) | coding (41/465 nt) | nrdG | anaerobic ribonucleotide reductase activating protein | |||||
| * | ? | NC_000913 | 3394456 = | 31 (0.810) | 3 (0.080) | 3/270 | 5.3 | 9.2% | coding (1803/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| ? | NC_000913 | 3394495 = | 30 (0.820) | coding (1764/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein | |||||
| * | ? | NC_000913 | = 3307712 | 46 (1.200) | 3 (0.080) | 3/272 | 5.3 | 6.4% | coding (149/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 3307717 | 43 (1.170) | coding (144/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||