mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.9% | 94.7 / 26.7 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 232553 = | 55 (1.060) | 6 (0.130) | 6/258 | 5.8 | 10.0% | intergenic (+4/+44) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D |
| ? | NC_000913 | 232584 = | 58 (1.220) | intergenic (+35/+13) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D | |||||
| * | ? | NC_000913 | = 4454798 | 60 (1.160) | 5 (0.100) | 5/270 | 6.6 | 8.2% | coding (812/999 nt) | fbp | fructose‑1,6‑bisphosphatase I |
| ? | NC_000913 | = 4454801 | 54 (1.090) | coding (809/999 nt) | fbp | fructose‑1,6‑bisphosphatase I | |||||
| * | ? | NC_000913 | 2791004 = | 55 (1.060) | 5 (0.100) | 5/270 | 6.6 | 8.5% | coding (1023/1269 nt) | lhgO | L‑2‑hydroxyglutarate oxidase |
| ? | NC_000913 | 2791022 = | 55 (1.110) | coding (1041/1269 nt) | lhgO | L‑2‑hydroxyglutarate oxidase | |||||
| * | ? | NC_000913 | 1396985 = | NA (NA) | 6 (0.120) | 5/272 | 6.6 | 9.1% | noncoding (942/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1427868 | 62 (1.190) | noncoding (927/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 382211 | NA (NA) | 7 (0.140) | 5/272 | 6.6 | NA | noncoding (952/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382218 | NA (NA) | noncoding (959/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4528522 = | 49 (0.940) | 4 (0.080) | 4/274 | 7.3 | 8.5% | coding (396/807 nt) | sgcQ | putative nucleoside triphosphatase |
| ? | NC_000913 | 4528542 = | 38 (0.750) | coding (376/807 nt) | sgcQ | putative nucleoside triphosphatase | |||||
| * | ? | NC_000913 | 671548 = | 57 (1.100) | 4 (0.080) | 3/260 | 7.6 | 7.1% | coding (58/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | NC_000913 | 671580 = | 52 (1.090) | coding (26/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| * | ? | NC_000913 | = 2780852 | 59 (1.140) | 3 (0.060) | 3/266 | 7.7 | 4.8% | coding (1875/4581 nt) | ypjA | adhesin‑like autotransporter |
| ? | NC_000913 | = 2780886 | 64 (1.310) | coding (1841/4581 nt) | ypjA | adhesin‑like autotransporter | |||||
| * | ? | NC_000913 | = 1489690 | NA (NA) | 4 (0.080) | 3/264 | 7.7 | NA | noncoding (8/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1489696 | NA (NA) | noncoding (14/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 838891 = | 66 (1.270) | 3 (0.060) | 3/262 | 7.7 | 5.0% | coding (317/678 nt) | ybiX | Fe(II)‑dependent oxygenase superfamily protein |
| ? | NC_000913 | 838921 = | 52 (1.080) | coding (287/678 nt) | ybiX | Fe(II)‑dependent oxygenase superfamily protein | |||||