mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,126,339 | 0 | C | T | 34.9% | 46.0 / 21.9 | 45 | T157T (ACG→ACA) | priA | Primosome factor n' (replication factor Y) |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 43 (1.020) | 9 (0.240) | 9/252 | 3.1 | 18.0% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 44 (1.180) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 43 (1.020) | 7 (0.190) | 7/252 | 3.8 | 14.7% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 43 (1.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3717214 = | 37 (0.880) | 3 (0.080) | 3/260 | 6.0 | 7.8% | intergenic (+9/‑95) | yiaD/ghrB | multicopy suppressor of bamB, outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B |
| ? | NC_000913 | 3717244 = | 37 (0.960) | intergenic (+39/‑65) | yiaD/ghrB | multicopy suppressor of bamB, outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B | |||||
| * | ? | NC_000913 | = 1681570 | 46 (1.090) | 3 (0.080) | 3/270 | 6.2 | 6.3% | coding (595/723 nt) | folM | dihydromonapterin reductase, NADPH‑dependent, dihydrofolate reductase isozyme |
| ? | NC_000913 | = 1681593 | 46 (1.150) | coding (618/723 nt) | folM | dihydromonapterin reductase, NADPH‑dependent, dihydrofolate reductase isozyme | |||||
| * | ? | NC_000913 | = 306834 | 40 (0.950) | 3 (0.070) | 3/272 | 6.2 | 7.4% | coding (2499/2526 nt) | ecpC | ECP production outer membrane protein |
| ? | NC_000913 | = 306863 | 37 (0.920) | coding (2470/2526 nt) | ecpC | ECP production outer membrane protein | |||||
| * | ? | NC_000913 | 273987 = | NA (NA) | 3 (0.070) | 3/272 | 6.2 | NA | intergenic (+33/+114) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator |
| ? | NC_000913 | 274057 = | NA (NA) | intergenic (+103/+44) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 2919067 = | 52 (1.240) | 3 (0.070) | 3/282 | 6.4 | 5.5% | coding (317/1341 nt) | gudD | D‑glucarate dehydratase 1 |
| ? | NC_000913 | 3131003 = | NA (NA) | coding (828/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 845739 | NA (NA) | 3 (0.070) | 3/282 | 6.4 | 8.2% | intergenic (‑259/+2) | ybiO/glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit |
| ? | NC_000913 | 1943717 = | 34 (0.810) | coding (304/786 nt) | znuB | zinc ABC transporter permease | |||||