mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 44 (0.870) | 7 (0.160) | 6/250 | 5.4 | 12.5% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 59 (1.310) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2219653 = | NA (NA) | 7 (0.150) | 6/268 | 5.8 | NA | noncoding (31/34 nt) | REP152 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP152 (repetitive extragenic palindromic) element, contains 1 REP sequences |
| ? | NC_000913 | = 4094716 | NA (NA) | noncoding (402/402 nt) | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | |||||
| * | ? | NC_000913 | 1207790 = | 46 (0.910) | 5 (0.110) | 5/250 | 5.9 | 9.1% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 59 (1.310) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3982817 = | 36 (0.710) | 4 (0.080) | 4/266 | 6.8 | 10.0% | intergenic (+7/‑140) | proM/aslB | tRNA‑Pro/putative AslA‑specific sulfatase‑maturating enzyme |
| ? | NC_000913 | 3982837 = | 38 (0.800) | intergenic (+27/‑120) | proM/aslB | tRNA‑Pro/putative AslA‑specific sulfatase‑maturating enzyme | |||||
| * | ? | NC_000913 | 3083829 = | 60 (1.180) | 6 (0.130) | 4/264 | 6.8 | 9.4% | intergenic (‑34/+104) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | 3083866 = | 59 (1.240) | intergenic (‑71/+67) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913 | = 2047464 | 49 (0.970) | 4 (0.080) | 4/266 | 6.8 | 7.5% | coding (2527/7077 nt) | yeeJ | putative adhesin |
| ? | NC_000913 | = 2047546 | 52 (1.090) | coding (2609/7077 nt) | yeeJ | putative adhesin | |||||
| * | ? | NC_000913 | = 4583138 | 53 (1.050) | 4 (0.080) | 4/270 | 6.9 | 7.6% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583225 | 47 (0.970) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 2647583 = | 40 (0.790) | 4 (0.080) | 4/270 | 6.9 | 9.3% | coding (4703/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein |
| ? | NC_000913 | 2647603 = | 40 (0.820) | coding (4683/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein | |||||
| * | ? | NC_000913 | = 788683 | 46 (0.910) | 4 (0.080) | 4/270 | 6.9 | 8.4% | coding (155/1041 nt) | galM | aldose 1‑epimerase, type‑1 mutarotase, galactose mutarotase |
| ? | NC_000913 | = 788692 | 43 (0.890) | coding (146/1041 nt) | galM | aldose 1‑epimerase, type‑1 mutarotase, galactose mutarotase | |||||
| * | ? | NC_000913 | 3146748 = | 47 (0.930) | 3 (0.060) | 3/260 | 7.3 | 7.3% | intergenic (‑13/+106) | yghW/yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| ? | NC_000913 | 3146774 = | 33 (0.710) | intergenic (‑39/+80) | yghW/yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family | |||||