mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 54 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 47 (0.750) | 11 (0.200) | 11/252 | 4.8 | 19.9% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 47 (0.840) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4295834 = | NA (NA) | 11 (0.180) | 6/276 | 7.6 | 30.6% | noncoding (1/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295923 = | 25 (0.410) | noncoding (90/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.100) | 5/266 | 7.9 | NA | coding (498/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274663 = | NA (NA) | coding (455/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 4178480 | 60 (0.950) | 5 (0.080) | 5/270 | 8.0 | 8.3% | coding (35/429 nt) | rplK | 50S ribosomal subunit protein L11 |
| ? | NC_000913 | = 4178483 | 54 (0.900) | coding (38/429 nt) | rplK | 50S ribosomal subunit protein L11 | |||||
| * | ? | NC_000913 | 4295834 = | NA (NA) | 11 (0.180) | 5/276 | 8.1 | 91.7% | noncoding (1/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4296262 = | 1 (0.020) | noncoding (429/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3941884 | 10 (0.160) | 8 (0.130) | 5/280 | 8.2 | 44.8% | noncoding (78/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4035619 | NA (NA) | noncoding (90/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3941882 | NA (NA) | 8 (0.130) | 5/280 | 8.2 | 31.1% | noncoding (76/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4208237 | 18 (0.290) | noncoding (92/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 1299667 = | NA (NA) | 5 (0.080) | 5/280 | 8.2 | NA | intergenic (+422/‑1515) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1299703 = | NA (NA) | intergenic (+458/‑1479) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 223862 | 7 (0.110) | 8 (0.130) | 5/280 | 8.2 | 53.7% | noncoding (92/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 3428685 = | NA (NA) | noncoding (76/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 565828 | 69 (1.100) | 7 (0.110) | 5/284 | 8.3 | 9.2% | coding (151/1164 nt) | intD | DLP12 prophage, putative phage integrase |
| ? | NC_000913 | = 575785 | NA (NA) | intergenic (‑32/+1) | insH1/nmpC | IS5 transposase and trans‑activator/DLP12 prophage, truncated outer membrane porin (pseudogene),IS, phage, Tn, Phage or Prophage Related, outer membrane porin protein, locus of qsr prophage | |||||