mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 34 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,440,194 | 0 | C | A | 50.6% | 7.0 / 151.1 | 77 | G279V (GGT→GTT) | rpoA | RNA polymerase subunit alpha |
| * | NC_000913 | 380,013 | 0 | G | . | 47.8% | 92.0 / 95.4 | 46 | intergenic (‑132/+56) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| * | NC_000913 | 12,086 | 0 | C | T | 47.4% | 14.4 / 121.6 | 76 | intergenic (‑300/‑77) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| * | NC_000913 | 2,406,141 | 0 | A | G | 46.4% | 19.3 / 131.2 | 84 | R167R (CGT→CGC) | lrhA | DNA‑binding transcriptional dual regulator LrhA |
| * | NC_000913 | 3,850,891 | 0 | G | A | 42.5% | 44.4 / 100.1 | 73 | Q68* (CAA→TAA) | ilvN | acetohydroxy acid synthase I subunit IlvN |
| * | NC_000913 | 3,816,579 | 0 | G | A | 41.5% | 40.0 / 91.1 | 65 | intergenic (‑30/‑97) | rph/yicC | truncated RNase PH/UPF0701 family protein YicC |
| * | NC_000913 | 3,829,233 | 0 | C | A | 40.0% | 70.3 / 88.0 | 65 | L97M (CTG→ATG) | xanP | xanthine:H(+) symporter XanP |
| * | NC_000913 | 3,980,951 | 1 | . | G | 39.6% | 19.2 / 109.1 | 48 | coding (65/1386 nt) | yifK | putative transporter YifK |
| * | NC_000913 | 1,811,208 | 0 | T | C | 38.3% | 97.6 / 114.0 | 94 | V92A (GTT→GCT) | tcyP | cystine/sulfocysteine:cation symporter |
| * | NC_000913 | 214,885 | 0 | C | T | 36.8% | 53.1 / 68.7 | 57 | T18I (ACC→ATC) | arfB | peptidyl‑tRNA hydrolase, ribosome rescue factor |
| * | NC_000913 | 3,213,803 | 0 | T | C | 35.2% | 58.9 / 61.5 | 54 | S253P (TCT→CCT) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.9% | 173.6 / 177.0 | 149 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,793,867 | 0 | C | A | 34.5% | 69.9 / 64.4 | 58 | A378D (GCT→GAT) | gabT | 4‑aminobutyrate aminotransferase GabT |
| * | NC_000913 | 4,070,462 | 0 | T | C | 33.9% | 83.0 / 63.0 | 62 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 4,070,483 | 0 | A | G | 32.5% | 77.2 / 15.1 | 40 | intergenic (‑82/+32) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 1,376,349 | 0 | A | C | 31.4% | 132.2 / 17.7 | 72 | T106P (ACC→CCC) | ycjR | putative ketohexose‑3‑epimerase YcjR |
| * | NC_000913 | 3,499,600 | 0 | T | G | 31.0% | 121.5 / 10.3 | 58 | G51G (GGT→GGG) | yhfL | DUF4223 domain‑containing lipoprotein YhfL |
| * | NC_000913 | 3,948,799 | 1 | . | G | 29.7% | 103.3 / 104.3 | 64 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| * | NC_000913 | 3,270,455 | 0 | G | T | 29.2% | 106.0 / 17.2 | 48 | noncoding (138/377 nt) | rnpB | RNase P catalytic RNA component |
| * | NC_000913 | 1,812,087 | 0 | G | T | 27.5% | 119.9 / 36.9 | 51 | G385V (GGC→GTC) | tcyP | cystine/sulfocysteine:cation symporter |