mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,864,585 | 0 | T | G | 43.1% | 114.8 / 236.5 | 188 | H229Q (CAT→CAG) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator |
| * | NC_000913 | 2,445,190 | 0 | A | C | 41.1% | 177.8 / 278.9 | 236 | F124C (TTC→TGC) | yfcA | TauE/TSUP family inner membrane protein |
| * | NC_000913 | 669,798 | 0 | T | G | 31.6% | 295.8 / 174.1 | 209 | N37T (AAT→ACT) | cobC | putative alpha‑ribazole‑5'‑P phosphatase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.1% | 682.6 / 251.9 | 394 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,152 | 0 | A | G | 23.3% | 292.0 / 29.3 | 159 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 1,958,272 | 0 | T | G | 22.7% | 503.2 / 141.3 | 238 | intergenic (‑140/+248) | torY/cutC | TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein |
| * | NC_000913 | 3,781,140 | 0 | A | G | 21.7% | 329.3 / 25.8 | 167 | intergenic (+123/‑75) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Marginal new junction evidence (lowest skew 10 of 882 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 683103 = | 183 (0.840) | 67 (0.310) | 51/196 | 8.6 | 26.8% | coding (291/1671 nt) | hscC | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| ? | NC_000913 | = 689045 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3943635 | NA (NA) | 75 (0.370) | 32/184 | 13.4 | 67.4% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037446 | 39 (0.180) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 225685 | 288 (1.310) | 74 (0.360) | 32/186 | 13.6 | 21.5% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 3943636 | NA (NA) | intergenic (+126/‑68) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 683103 = | 183 (0.840) | 62 (0.290) | 30/194 | 15.1 | 25.5% | coding (291/1671 nt) | hscC | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3426836 = | NA (NA) | 61 (0.300) | 27/184 | 15.4 | NA | intergenic (‑53/+122) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913 | 3426854 = | NA (NA) | intergenic (‑71/+104) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 227039 | 104 (0.470) | 92 (0.450) | 27/186 | 15.6 | 48.5% | noncoding (1281/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2727897 = | NA (NA) | noncoding (1288/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227039 | 104 (0.470) | 91 (0.440) | 27/186 | 15.6 | 51.5% | noncoding (1281/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227046 | 74 (0.360) | noncoding (1288/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225685 | 288 (1.310) | 62 (0.300) | 27/186 | 15.6 | 18.6% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 3426842 = | NA (NA) | intergenic (‑59/+116) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913 | 2729630 = | NA (NA) | 85 (0.410) | 27/188 | 15.8 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227039 | 104 (0.470) | 93 (0.450) | 26/186 | 16.0 | 60.5% | noncoding (1281/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 4038805 | 24 (0.120) | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||