mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 175,816 | T→G | intergenic (+110/‑242) | ECDH1_RS00860 → / → dppA | hypothetical protein/periplasmic dipeptide transporter |
| RA | 236,086 | A→G | intergenic (+28/+26) | ECDH1_RS01120 → / ← gor | hypothetical protein/glutathione reductase |
| JC JC | 1,971,027 | repeat_region (+) +4 bp :: Δ3 bp | coding (141‑144/144 nt) | yobF → | DUF2527 domain‑containing protein |
| RA | 2,567,006 | A→C | I74L (ATT→CTT) | yciB → | intracellular septation protein A |
| JC | 3,516,225 | Δ94 bp | intergenic (‑192/+45) | codB ← / ← prpE | cytosine permease/propionyl‑CoA synthetase |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| RA | 3,701,765 | Δ1 bp | coding (2129/2244 nt) | fhuA ← | ferrichrome‑iron receptor |
| RA | 4,137,702 | G→A | S2F (TCC→TTC) | sugE ← | quaternary ammonium compound‑resistance protein SugE |
| RA | 4,546,838 | T→G | T406P (ACC→CCC) | rho ← | transcription termination factor Rho |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 100748 = | 85 (0.310) | 220 (0.850) | 143/284 | 0.4 | 73.0% | coding (647/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD(P)(+)) |
| ? | DH1 | = 100792 | 82 (0.320) | coding (691/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD(P)(+)) | |||||
| * | ? | DH1 | = 163130 | 12 (0.040) | 282 (1.030) | 179/300 | 0.0 | 92.8% | intergenic (‑47/‑33) | insJ/hokA | transposase/protein HokA |
| ? | DH1 | = 285833 | 32 (0.120) | intergenic (‑54/‑370) | panM/livK | pantothenate synthesis PanD autocleavage accelerator/branched chain amino acid ABC transporter substrate‑binding protein | |||||
| * | ? | DH1 | 258175 = | 10 (0.040) | 310 (1.140) | 179/298 | 0.0 | 94.0% | intergenic (+91/+74) | yhhJ/yhhI | inner membrane transport permease YhhJ/H repeat‑associated protein yhhI |
| ? | DH1 | 285831 = | 30 (0.110) | intergenic (‑52/‑372) | panM/livK | pantothenate synthesis PanD autocleavage accelerator/branched chain amino acid ABC transporter substrate‑binding protein | |||||
| * | ? | DH1 | = 2443519 | 15 (0.050) | 192 (0.850) | 134/248 | 0.2 | 94.5% | intergenic (+226/‑735) | uspF/ynaE | universal stress protein F/cold‑shock protein |
| ? | DH1 | 2466580 = | 10 (0.040) | coding (51/936 nt) | ttcA | tRNA 2‑thiocytidine(32) synthetase TtcA | |||||